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    643 repositories

    • COVIDTrtTrialDesign

      Public
      R
      •0•0•0•0•Updated Aug 31, 2025Aug 31, 2025

    • IC-RISC-Working

      Public
      IC-RISC working
      shinyapp
      R
      •
      Other
      •0•0•0•0•Updated Aug 31, 2025Aug 31, 2025

    • wdl-unit-tests

      Public
      Collection of simple WDL's for use in unit testing of WDL-centric software such as PROOF
      Python
      •
      MIT License
      •1•1•22•1•Updated Aug 31, 2025Aug 31, 2025

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      Python
      •
      Other
      •46•40•58•9•Updated Aug 29, 2025Aug 29, 2025

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •5•16•0•0•Updated Aug 29, 2025Aug 29, 2025

    • VISCfunctions

      Public
      R
      •
      Other
      •4•10•13•3•Updated Aug 28, 2025Aug 28, 2025

    • marimo-functions

      Public
      Flexible interface for defining functions with marimo UI inputs
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • ocdo

      Public
      Home of the OCDO public website
      SCSS
      •1•0•1•0•Updated Aug 28, 2025Aug 28, 2025

    • DPR2

      Public
      DPR2 - DataPackageR2
      R
      •
      Other
      •0•2•7•1•Updated Aug 28, 2025Aug 28, 2025

    • VISCtemplates

      Public
      Tools for creating polished and reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•39•2•Updated Aug 27, 2025Aug 27, 2025

    • swarm-build-helper

      Public
      Python
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • cohn-treemaker

      Public
      WebApp to create Phylogenetic Trees with stacked clones from newick files containing sequencing data
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 26, 2025Aug 26, 2025

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•22•6•1•Updated Aug 25, 2025Aug 25, 2025

    • sas-transport

      Public
      A java library for reading and writing SAS transport files
      javasasjava-libraryxport
      Java
      •
      MIT License
      •0•2•0•0•Updated Aug 25, 2025Aug 25, 2025

    • sas7bdat

      Public
      A java library for writing SAS7BDAT datasets
      javasas7bdat
      Java
      •
      MIT License
      •0•3•0•0•Updated Aug 25, 2025Aug 25, 2025

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•3•7•0•Updated Aug 21, 2025Aug 21, 2025

    • sas7bdat-specification

      Public
      A reverse engineering of the sas7bdat file format
      sassas7bdat
      Shell
      •23•2•0•0•Updated Aug 21, 2025Aug 21, 2025

    • Ishida-etal-2023

      Public
      Repo for the computational code used in Ishida et al. 2023, submitted.
      R
      •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • ood_marimo

      Public
      Shell
      •
      MIT License
      •0•1•0•0•Updated Aug 19, 2025Aug 19, 2025

    • bsr-tornado-viewer

      Public
      Tornado plot viewer - Bioinformatics Shared Resource
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • quantitative-spatial-analysis

      Public
      Analyze collections of spatial data objects
      Python
      •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

    • tfcb_2025

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2025
      Jupyter Notebook
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • bsr-compare-vcf

      Public
      Interactive comparison of VCF files
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • pgmap

      Public
      Python
      •
      MIT License
      •1•0•3•0•Updated Aug 8, 2025Aug 8, 2025

    • docker-singler

      Public
      Docker image with SingleR installed
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•1•7•2•Updated Aug 5, 2025Aug 5, 2025

    • marimo-plotly

      Public
      General purpose implementation of plotly figure generation
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • gig-map-viewer

      Public
      Interactive viewer of pangenome results generated by gig-map
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

    • nf-star-build-index

      Public
      Build an indexed genome for use with the STAR aligner
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • motuz

      Public
      Motuz - A web based infrastructure for large scale data movements between on-premise and cloud
      JavaScript
      •
      MIT License
      •13•111•75•35•Updated Jul 23, 2025Jul 23, 2025