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Modified app.js to return object instead of writing to file; moved code to write to file to cli.js #126

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Merged
jafeltra merged 3 commits into from
Jun 4, 2021
Merged

Modified app.js to return object instead of writing to file; moved code to write to file to cli.js #126

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29d7f8c
Modified app.js to return object instead of writing to file; moved co…
SenecaAnderson Jun 3, 2021
e3d01b4
Deleted excess comments in app.js
SenecaAnderson Jun 3, 2021
d0f9cec
Fixed linting errors and extractData declaration in cli.js
SenecaAnderson Jun 3, 2021
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14 changes: 1 addition & 13 deletions src/cli/app.js
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Original file line number Diff line number Diff line change
Expand Up @@ -129,19 +129,7 @@ async function mcodeApp(Client, fromDate, toDate, pathToConfig, pathToRunLogs, d
}
}

// Finally, save the data to disk
const outputPath = './output';
if (!fs.existsSync(outputPath)) {
logger.info(`Creating directory ${outputPath}`);
fs.mkdirSync(outputPath);
}
// For each bundle in our extractedData, write it to our output directory
extractedData.forEach((bundle, i) => {
const outputFile = path.join(outputPath, `mcode-extraction-patient-${i + 1}.json`);
logger.debug(`Logging mCODE output to ${outputFile}`);
fs.writeFileSync(outputFile, JSON.stringify(bundle), 'utf8');
});
logger.info(`Successfully logged ${extractedData.length} mCODE bundle(s) to ${outputPath}`);
return extractedData;
}

module.exports = {
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17 changes: 16 additions & 1 deletion src/cli/cli.js
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
const fs = require('fs');
const path = require('path');
const program = require('commander');
const { MCODEClient } = require('../client/MCODEClient');
Expand Down Expand Up @@ -26,7 +27,21 @@ const allEntries = !entriesFilter;

async function runApp() {
try {
await mcodeApp(MCODEClient, fromDate, toDate, configFilepath, runLogFilepath, debug, allEntries);
const extractedData = await mcodeApp(MCODEClient, fromDate, toDate, configFilepath, runLogFilepath, debug, allEntries);

// Finally, save the data to disk
const outputPath = './output';
if (!fs.existsSync(outputPath)) {
logger.info(`Creating directory ${outputPath}`);
fs.mkdirSync(outputPath);
}
// For each bundle in our extractedData, write it to our output directory
extractedData.forEach((bundle, i) => {
const outputFile = path.join(outputPath, `mcode-extraction-patient-${i + 1}.json`);
logger.debug(`Logging mCODE output to ${outputFile}`);
fs.writeFileSync(outputFile, JSON.stringify(bundle), 'utf8');
});
logger.info(`Successfully logged ${extractedData.length} mCODE bundle(s) to ${outputPath}`);
} catch (e) {
if (debug) logger.level = 'debug';
logger.error(e.message);
Expand Down