replace R_FINITE with c99's isfinite

src/assign.c

@@ -967,14 +967,14 @@ const char *memrecycle(const SEXP target, const SEXP where, const int start, con
       case INTSXP:  CHECK_RANGE(int, INTEGER,  val<0 || val>255,                                        val, _("%d (type '%s') at RHS position %d taken as 0 when assigning to type '%s' %s"))
       case REALSXP: if (sourceIsI64)
                     CHECK_RANGE(int64_t, REAL, val<0 || val>255,                                        val, _("%"PRId64" (type '%s') at RHS position %d taken as 0 when assigning to type '%s' %s"))
-              else  CHECK_RANGE(double, REAL,  !R_FINITE(val) || val<0.0 || val>256.0 || (int)val!=val, val, _("%f (type '%s') at RHS position %d either truncated (precision lost) or taken as 0 when assigning to type '%s' %s"))
+              else  CHECK_RANGE(double, REAL,  !isfinite(val) || val<0.0 || val>256.0 || (int)val!=val, val, _("%f (type '%s') at RHS position %d either truncated (precision lost) or taken as 0 when assigning to type '%s' %s"))
       } break;
     case INTSXP:
       switch (TYPEOF(source)) {
       case REALSXP: if (sourceIsI64)
                     CHECK_RANGE(int64_t, REAL, val!=NA_INTEGER64 && (val<=NA_INTEGER || val>INT_MAX),   val, _("%"PRId64" (type '%s') at RHS position %d out-of-range (NA) when assigning to type '%s' %s"))
               else  CHECK_RANGE(double, REAL,  !ISNAN(val) && (!within_int32_repres(val) || (int)val!=val),        val, _("%f (type '%s') at RHS position %d out-of-range(NA) or truncated (precision lost) when assigning to type '%s' %s"))
-      case CPLXSXP: CHECK_RANGE(Rcomplex, COMPLEX, !((ISNAN(val.i) || (R_FINITE(val.i) && val.i==0.0)) &&
+      case CPLXSXP: CHECK_RANGE(Rcomplex, COMPLEX, !((ISNAN(val.i) || (isfinite(val.i) && val.i==0.0)) &&
                                                      (ISNAN(val.r) || (within_int32_repres(val.r) && (int)val.r==val.r))), val.r, _("%f (type '%s') at RHS position %d either imaginary part discarded or real part truncated (precision lost) when assigning to type '%s' %s"))
       } break;
     case REALSXP:
@@ -983,9 +983,9 @@ const char *memrecycle(const SEXP target, const SEXP where, const int start, con
                     CHECK_RANGE(double, REAL,  !ISNAN(val) && (!within_int64_repres(val) || (int64_t)val!=val),    val, _("%f (type '%s') at RHS position %d out-of-range(NA) or truncated (precision lost) when assigning to type '%s' %s"))
                     break;
       case CPLXSXP: if (targetIsI64)
-                    CHECK_RANGE(Rcomplex, COMPLEX, !((ISNAN(val.i) || (R_FINITE(val.i) && val.i==0.0)) &&
-                                                     (ISNAN(val.r) || (R_FINITE(val.r) && (int64_t)val.r==val.r))), val.r, _("%f (type '%s') at RHS position %d either imaginary part discarded or real part truncated (precision lost) when assigning to type '%s' %s"))
-              else  CHECK_RANGE(Rcomplex, COMPLEX, !(ISNAN(val.i) || (R_FINITE(val.i) && val.i==0.0)),  val.r, _("%f (type '%s') at RHS position %d imaginary part discarded when assigning to type '%s' %s"))
+                    CHECK_RANGE(Rcomplex, COMPLEX, !((ISNAN(val.i) || (isfinite(val.i) && val.i==0.0)) &&
+                                                     (ISNAN(val.r) || (isfinite(val.r) && (int64_t)val.r==val.r))), val.r, _("%f (type '%s') at RHS position %d either imaginary part discarded or real part truncated (precision lost) when assigning to type '%s' %s"))
+              else  CHECK_RANGE(Rcomplex, COMPLEX, !(ISNAN(val.i) || (isfinite(val.i) && val.i==0.0)),  val.r, _("%f (type '%s') at RHS position %d imaginary part discarded when assigning to type '%s' %s"))
       }
     }
   }

src/data.table.h

@@ -21,6 +21,7 @@
 #include <stdint.h>    // for uint64_t rather than unsigned long long
 #include <stdarg.h>    // for va_list, va_start
 #include <stdbool.h>
+#include <math.h> // isfinite
 #include "types.h"
 #include "po.h"
 #ifdef WIN32  // positional specifiers (%n$) used in translations; #4402

src/fastmean.c

@@ -70,7 +70,7 @@ SEXP fastmean(SEXP args)
         break;
       }
       s /= n;
-      if(R_FINITE((double)s)) {
+      if(isfinite((double)s)) {
         for (int i=0; i<l; ++i) {
           if(ISNAN(REAL(x)[i])) continue;
           t += (REAL(x)[i] - s);
@@ -98,7 +98,7 @@ SEXP fastmean(SEXP args)
         s += REAL(x)[i];
       }
       s /= l;
-      if(R_FINITE((double)s)) {
+      if(isfinite((double)s)) {
         for (int i=0; i<l; ++i) {
           // no NA if got this far
           t += (REAL(x)[i] - s);
@@ -123,7 +123,7 @@ SEXP fastmean(SEXP args)
       si += COMPLEX(x)[i].i;
       }
       s /= n; si /= n;
-      if( R_FINITE((double)s) && R_FINITE((double)si) ) {
+      if( isfinite((double)s) && isfinite((double)si) ) {
       for (int i=0; i<n; ++i) {
         t += COMPLEX(x)[i].r - s;
         ti += COMPLEX(x)[i].i - si;

src/forder.c

@@ -214,10 +214,10 @@ static void range_d(double *x, int n, uint64_t *out_min, uint64_t *out_max, int
   uint64_t min=0, max=0;
   int na_count=0, infnan_count=0;
   int i=0;
-  while(i<n && !R_FINITE(x[i])) { ISNA(x[i++]) ? na_count++ : infnan_count++; }
+  while(i<n && !isfinite(x[i])) { ISNA(x[i++]) ? na_count++ : infnan_count++; }
   if (i<n) { max = min = dtwiddle(x[i++]); }
   for(; i<n; i++) {
-    if (!R_FINITE(x[i])) { ISNA(x[i]) ? na_count++ : infnan_count++; continue; }
+    if (!isfinite(x[i])) { ISNA(x[i]) ? na_count++ : infnan_count++; continue; }
     uint64_t tmp = dtwiddle(x[i]);
     if (tmp>max) max=tmp;
     else if (tmp<min) min=tmp;
@@ -426,7 +426,7 @@ uint64_t dtwiddle(double x) //const void *p, int i)
     uint64_t u64;
   } u;  // local for thread safety
   u.d = x; //((double *)p)[i];
-  if (R_FINITE(u.d)) {
+  if (isfinite(u.d)) {
     if (u.d==0) u.d=0; // changes -0.0 to 0.0,  issue #743
     u.u64 ^= (u.u64 & 0x8000000000000000) ? 0xffffffffffffffff : 0x8000000000000000; // always flip sign bit and if negative (sign bit was set) flip other bits too
     u.u64 += (u.u64 & dmask) << 1/*is this shift really correct. No need to shift*/  ;   // when dround==1|2, if 8th|16th bit is set, round up before chopping last 1|2 bytes
@@ -750,15 +750,15 @@ SEXP forder(SEXP DT, SEXP by, SEXP retGrpArg, SEXP retStatsArg, SEXP sortGroupsA
         #pragma omp parallel for num_threads(getDTthreads(nrow, true))
         for (int i=0; i<nrow; i++) {
           uint64_t elem=0;
-          if (!R_FINITE(xd[i])) {
+          if (!isfinite(xd[i])) {
             if (isinf(xd[i])) elem = signbit(xd[i]) ? min-1 : max+1;
             else {
               if (nalast==-1) anso[i]=0;  // for both NA and NaN
               elem = ISNA(xd[i]) ? naval : nanval;
             }
           } else {
             elem = dtwiddle(xd[i]);  // TODO: could avoid twiddle() if all positive finite which could be known from range_d.
-                                     //       also R_FINITE is repeated within dtwiddle() currently, wastefully given the if() above
+                                     //       also isfinite is repeated within dtwiddle() currently, wastefully given the if() above
           }
           WRITE_KEY
         }

src/freadR.c

@@ -127,7 +127,7 @@ SEXP freadR(
   args.nrowLimit = INT64_MAX;
   if (!isReal(nrowLimitArg) || length(nrowLimitArg) != 1)
     internal_error(__func__, "nrows not a single real. R level catches this.");  // # nocov
-  if (R_FINITE(REAL(nrowLimitArg)[0]) && REAL(nrowLimitArg)[0] >= 0.0)
+  if (isfinite(REAL(nrowLimitArg)[0]) && REAL(nrowLimitArg)[0] >= 0.0)
     args.nrowLimit = (int64_t)(REAL(nrowLimitArg)[0]);
 
   args.logical01 = LOGICAL(logical01Arg)[0];

src/froll.c

@@ -65,13 +65,13 @@ void frollmeanFast(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool
     }
     w += x[i];                                                  // i==k-1
     ans->dbl_v[i] = (double) (w / k);                           // first full sliding window, non-fill rollfun answer
-    if (R_FINITE((double) w)) {                                 // proceed only if no NAs detected in first k obs, otherwise early stopping
+    if (isfinite((double) w)) {                                 // proceed only if no NAs detected in first k obs, otherwise early stopping
       for (uint64_t i=k; i<nx; i++) {                           // loop over obs, complete window, all remaining after partial window
         w -= x[i-k];                                            // remove leaving row from sliding window
         w += x[i];                                              // add current row to sliding window
         ans->dbl_v[i] = (double) (w / k);                       // rollfun to answer vector
       }
-      if (!R_FINITE((double) w)) {                              // mark to re-run with NA care
+      if (!isfinite((double) w)) {                              // mark to re-run with NA care
         if (hasna==-1) {                                        // raise warning
           ans->status = 2;
           snprintf(end(ans->message[2]), 500, _("%s: hasNA=FALSE used but NA (or other non-finite) value(s) are present in input, use default hasNA=NA to avoid this warning"), __func__);
@@ -96,14 +96,14 @@ void frollmeanFast(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool
     int nc = 0;                                                 // NA counter within sliding window
     int i;                                                      // iterator declared here because it is being used after for loop
     for (i=0; i<k-1; i++) {                                     // loop over leading observation, all partial window only; #loop_counter_not_local_scope_ok
-      if (R_FINITE(x[i])) {
+      if (isfinite(x[i])) {
         w += x[i];                                              // add only finite values to window aggregate
       } else {
         nc++;                                                   // increment NA count in current window
       }
       ans->dbl_v[i] = fill;                                     // partial window fill all
     }
-    if (R_FINITE(x[i])) {
+    if (isfinite(x[i])) {
       w += x[i];                                                // i==k-1
     } else {
       nc++;
@@ -116,12 +116,12 @@ void frollmeanFast(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool
       ans->dbl_v[i] = narm ? (double) (w / (k - nc)) : NA_REAL; // some values in window are NA
     }
     for (uint64_t i=k; i<nx; i++) {                             // loop over obs, complete window, all remaining after partial window
-      if (R_FINITE(x[i])) {
+      if (isfinite(x[i])) {
         w += x[i];                                              // add only finite to window aggregate
       } else {
         nc++;                                                   // increment NA count in current window
       }
-      if (R_FINITE(x[i-k])) {
+      if (isfinite(x[i-k])) {
         w -= x[i-k];                                            // remove only finite from window aggregate
       } else {
         nc--;                                                   // decrement NA count in current window
@@ -158,7 +158,7 @@ void frollmeanExact(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool
       for (int j=-k+1; j<=0; j++) {                             // sub-loop on window width
         w += x[i+j];                                            // sum of window for particular observation
       }
-      if (R_FINITE((double) w)) {                               // no need to calc roundoff correction if NAs detected as will re-call all below in truehasna==1
+      if (isfinite((double) w)) {                               // no need to calc roundoff correction if NAs detected as will re-call all below in truehasna==1
         long double res = w / k;                                // keep results as long double for intermediate processing
         long double err = 0.0;                                  // roundoff corrector
         for (int j=-k+1; j<=0; j++) {                           // nested loop on window width
@@ -268,13 +268,13 @@ void frollsumFast(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool n
     }
     w += x[i];
     ans->dbl_v[i] = (double) w;
-    if (R_FINITE((double) w)) {
+    if (isfinite((double) w)) {
       for (uint64_t i=k; i<nx; i++) {
         w -= x[i-k];
         w += x[i];
         ans->dbl_v[i] = (double) w;
       }
-      if (!R_FINITE((double) w)) {
+      if (!isfinite((double) w)) {
         if (hasna==-1) {
           ans->status = 2;
           snprintf(end(ans->message[2]), 500, _("%s: hasNA=FALSE used but NA (or other non-finite) value(s) are present in input, use default hasNA=NA to avoid this warning"), __func__);
@@ -299,14 +299,14 @@ void frollsumFast(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool n
     int nc = 0;
     int i;
     for (i=0; i<k-1; i++) { // #loop_counter_not_local_scope_ok
-      if (R_FINITE(x[i])) {
+      if (isfinite(x[i])) {
         w += x[i];
       } else {
         nc++;
       }
       ans->dbl_v[i] = fill;
     }
-    if (R_FINITE(x[i])) {
+    if (isfinite(x[i])) {
       w += x[i];
     } else {
       nc++;
@@ -319,12 +319,12 @@ void frollsumFast(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool n
       ans->dbl_v[i] = narm ? (double) w : NA_REAL;
     }
     for (uint64_t i=k; i<nx; i++) {
-      if (R_FINITE(x[i])) {
+      if (isfinite(x[i])) {
         w += x[i];
       } else {
         nc++;
       }
-      if (R_FINITE(x[i-k])) {
+      if (isfinite(x[i-k])) {
         w -= x[i-k];
       } else {
         nc--;
@@ -356,7 +356,7 @@ void frollsumExact(double *x, uint64_t nx, ans_t *ans, int k, double fill, bool
       for (int j=-k+1; j<=0; j++) {
         w += x[i+j];
       }
-      if (R_FINITE((double) w)) {
+      if (isfinite((double) w)) {
         ans->dbl_v[i] = (double) w;
       } else {
         if (!narm) {

src/frolladaptive.c

@@ -41,7 +41,7 @@ void fadaptiverollmeanFast(double *x, uint64_t nx, ans_t *ans, int *k, double fi
       w += x[i];                                                // cumulate in long double
       cs[i] = (double) w;
     }
-    if (R_FINITE((double) w)) {                                 // no need to calc this if NAs detected as will re-calc all below in truehasna==1
+    if (isfinite((double) w)) {                                 // no need to calc this if NAs detected as will re-calc all below in truehasna==1
       #pragma omp parallel for num_threads(getDTthreads(nx, true))
       for (uint64_t i=0; i<nx; i++) {                           // loop over observations to calculate final answer
         if (i+1 == k[i]) {
@@ -74,7 +74,7 @@ void fadaptiverollmeanFast(double *x, uint64_t nx, ans_t *ans, int *k, double fi
       return;
     }                                                           // # nocov end
     for (uint64_t i=0; i<nx; i++) {                             // loop over observations to calculate cumsum and cum NA counter
-      if (R_FINITE(x[i])) {
+      if (isfinite(x[i])) {
         w += x[i];                                              // add observation to running sum
       } else {
         nc++;                                                   // increment non-finite counter
@@ -126,7 +126,7 @@ void fadaptiverollmeanExact(double *x, uint64_t nx, ans_t *ans, int *k, double f
         for (int j=-k[i]+1; j<=0; j++) {                        // sub-loop on window width
           w += x[i+j];                                          // sum of window for particular observation
         }
-        if (R_FINITE((double) w)) {                             // no need to calc roundoff correction if NAs detected as will re-call all below in truehasna==1
+        if (isfinite((double) w)) {                             // no need to calc roundoff correction if NAs detected as will re-call all below in truehasna==1
           long double res = w / k[i];                           // keep results as long double for intermediate processing
           long double err = 0.0;                                // roundoff corrector
           for (int j=-k[i]+1; j<=0; j++) {                      // sub-loop on window width
@@ -230,7 +230,7 @@ void fadaptiverollsumFast(double *x, uint64_t nx, ans_t *ans, int *k, double fil
       w += x[i];
       cs[i] = (double) w;
     }
-    if (R_FINITE((double) w)) {
+    if (isfinite((double) w)) {
       #pragma omp parallel for num_threads(getDTthreads(nx, true))
       for (uint64_t i=0; i<nx; i++) {
         if (i+1 == k[i]) {
@@ -263,7 +263,7 @@ void fadaptiverollsumFast(double *x, uint64_t nx, ans_t *ans, int *k, double fil
       return;
     }                                                           // # nocov end
     for (uint64_t i=0; i<nx; i++) {
-      if (R_FINITE(x[i])) {
+      if (isfinite(x[i])) {
         w += x[i];
       } else {
         nc++;
@@ -310,7 +310,7 @@ void fadaptiverollsumExact(double *x, uint64_t nx, ans_t *ans, int *k, double fi
         for (int j=-k[i]+1; j<=0; j++) {
           w += x[i+j];
         }
-        if (R_FINITE((double) w)) {
+        if (isfinite((double) w)) {
           ans->dbl_v[i] = (double) w;
         } else {
           if (!narm) {

src/utils.c

@@ -4,11 +4,11 @@ bool within_int32_repres(double x) {
   // N.B. (int)2147483647.99 is not undefined behaviour since s 6.3.1.4 of the C
   // standard states that behaviour is undefined only if the integral part of a
   // finite value of standard floating type cannot be represented.
-  return R_FINITE(x) && x < 2147483648 && x > -2147483648;
+  return isfinite(x) && x < 2147483648 && x > -2147483648;
 }
 
 bool within_int64_repres(double x) {
-  return R_FINITE(x) && x <= (double)INT64_MAX && x >= (double)INT64_MIN;
+  return isfinite(x) && x <= (double)INT64_MAX && x >= (double)INT64_MIN;
 }
 
 // used to error if not passed type double but this needed extra is.double() calls in calling R code