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Merged
merged 525 commits into from
Apr 29, 2025
Merged

Models hub internal #1783

merged 525 commits into from
Apr 29, 2025

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Meryem1425
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jsl-models and others added 30 commits July 1, 2024 16:18
* Add model 2024-06-28-explain_clinical_doc_granular_en

* Update 2024-06-28-explain_clinical_doc_granular_en.md

* Add model 2024-07-01-ner_alcohol_smoking_en

* Update 2024-07-01-ner_alcohol_smoking_en.md

* Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en

* Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md

* Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en

* Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md

* Update 2024-07-01-ner_alcohol_smoking_en.md

* Add model 2024-07-02-biolordresolve_rxnorm_augmented_en

* Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>
Co-authored-by: Akar <[email protected]>
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en

* Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C <[email protected]>
* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md

* Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md

* Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en

* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md

* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md

* Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en

* Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md

* Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en

* Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md

* Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en

* Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>
* Add model 2024-06-26-contextual_assertion_someone_else_en

* Add model 2024-07-03-contextual_assertion_absent_en

* Add model 2024-07-04-contextual_assertion_past_en

* updated model table.

* updated model table-2

* updated example text

---------

Co-authored-by: yigitgull <[email protected]>
Co-authored-by: yigitgull <[email protected]>
* Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>
* Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>
* Add model 2024-08-02-bert_sequence_classifier_metastasis_en

* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md

* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md

* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>
jsl-models and others added 27 commits February 14, 2025 02:01
JSL library version of python script is added.
* Add model 2025-02-19-sbiobertresolve_mesh_augmented_en

* Add model 2025-02-19-sbiobertresolve_mesh_veterinary_en

* Add model 2025-02-19-sbiobertresolve_mesh_en

* Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md

* Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md

* Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md

* Update 2025-02-19-sbiobertresolve_mesh_en.md

* Update 2025-02-19-sbiobertresolve_mesh_en.md

* Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md

* Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>
* Add model 2025-03-18-clinical_deidentification_docwise_wip_en

* Update 2025-03-18-clinical_deidentification_docwise_wip_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Gökhan <[email protected]>
* Add model 2025-03-18-clinical_deidentification_docwise_wip_en

* Update 2025-03-18-clinical_deidentification_docwise_wip_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>
* Add model 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en

* Update 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>
* Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en

* Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md

* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en

* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Vildan <[email protected]>
* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en

* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>
* Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en

* Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md

* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en

* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md

* Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en

* Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Vildan <[email protected]>
* Add model 2025-03-27-ner_admission_discharge_benchmark_pipeline_en

* added benchmark

* Add model 2025-03-27-ner_body_part_benchmark_pipeline_en

* Update 2025-03-27-ner_body_part_benchmark_pipeline_en.md

* Add model 2025-03-27-ner_treatment_benchmark_pipeline_en

* Add model 2025-03-27-ner_procedure_benchmark_pipeline_en

* Add model 2025-03-27-ner_alcohol_use_benchmark_pipeline_en

* Add model 2025-03-28-ner_substance_use_benchmark_pipeline_en

* Add model 2025-03-28-ner_consumption_benchmark_pipeline_en

* Add model 2025-03-28-ner_tobaco_use_benchmark_pipeline_en

* Add model 2025-03-28-ner_grade_stage_severity_benchmark_pipeline_en

* Add model 2025-03-28-ner_problem_benchmark_pipeline_en

* Add model 2025-03-27-ner_drug_benchmark_pipeline_en

* Add model 2025-03-27-ner_test_benchmark_pipeline_en

* modelcards fixed

* Add model 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en

* Add model 2025-03-28-ner_medical_condition_disorder_benchmark_pipeline_en

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C. <[email protected]>
@Meryem1425 Meryem1425 requested a review from Cabir40 April 29, 2025 19:27
@vkocaman vkocaman merged commit 41abcf6 into main Apr 29, 2025
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8 participants