2025-03-13-clinical_deidentification_nameAugmented_v3_en #1734

jsl-models · 2025-03-13T06:36:16Z

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* 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * 2024-09-11-state_matcher_en (#1458) * Add model 2024-09-11-state_matcher_en * Update 2024-09-11-state_matcher_en.md FİXED CODE BLOCK VİEW --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-11-explain_clinical_doc_oncology_en (#1461) * 2024-09-11-explain_clinical_doc_oncology_en (#1462) * 2024-09-11-explain_clinical_doc_oncology_en (#1463) * 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464) * Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en * Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-09-12-sbiobertresolve_ndc_en (#1466) * Add model 2024-09-12-sbiobertresolve_ndc_en * Update 2024-09-12-sbiobertresolve_ndc_en.md typo fixed --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468) * removed md cart * 2024-09-13-ndc_resolver_pipeline_en (#1473) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1470) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1469) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1478) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Add model 2024-09-09-explain_clinical_doc_cancer_type_en * Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md This PP is the previous version of the cancer_type PP * Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1479) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1480) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * deleted md cards * 2024-09-17-oncology_biomarker_pipeline_en (#1487) * 2024-09-17-oncology_biomarker_pipeline_en (#1486) * 2024-09-17-oncology_biomarker_pipeline_en (#1485) * 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496) * 2024-09-24-clinical_deidentification_v2_wip_en (#1501) * Add model 2024-09-24-clinical_deidentification_v2_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Add model 2024-09-25-clinical_deidentification_docwise_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-25-ner_deid_aipii_en (#1503) * Add model 2024-09-25-ner_deid_aipii_en * Update 2024-09-25-ner_deid_aipii_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-clinical_deidentification_v2_wip_en (#1505) * Add model 2024-09-27-clinical_deidentification_v2_wip_en * Update 2024-09-27-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Add model 2024-09-29-email_matcher_en (#1512) Co-authored-by: yigitgull <[email protected]> * 2024-09-30-clinical_deidentification_v2_wip_en (#1516) * Add model 2024-10-01-jsl_medm_q8_v1_en (#1517) Co-authored-by: akrztrk <[email protected]> * Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518) Co-authored-by: akrztrk <[email protected]> * 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519) * Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1522) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1523) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1524) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525) * 2024-10-04-jsl_medm_q4_v1_en (#1529) * 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530) * 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535) * 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536) * 2024-10-08-jsl_medm_q16_v2_en (#1538) * 2024-10-08-loinc_resolver_pipeline_en (#1540) * Add model 2024-10-08-loinc_resolver_pipeline_en * Update 2024-10-08-loinc_resolver_pipeline_en.md * Update 2024-10-08-loinc_resolver_pipeline_en.md * Add model 2024-10-08-loinc_numeric_resolver_pipeline_en * Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-08-loinc_resolver_pipeline_en (#1539) * 2024-10-14-explain_clinical_doc_oncology_en (#1547) * 2024-10-14-explain_clinical_doc_oncology_en (#1548) * 2024-10-14-explain_clinical_doc_oncology_en (#1549) * 2024-10-17-ssn_parser_en (#1554) * Add model 2024-10-17-ssn_parser_en * Update 2024-10-17-ssn_parser_en.md * Add model 2024-10-17-account_parser_en * Update 2024-10-17-account_parser_en.md * Add model 2024-10-18-dln_parser_en * Update 2024-10-18-dln_parser_en.md * Add model 2024-10-18-plate_parser_en * Update 2024-10-18-plate_parser_en.md * Add model 2024-10-18-vin_parser_en * Update 2024-10-18-vin_parser_en.md * Add model 2024-10-18-license_parser_en * Update 2024-10-18-license_parser_en.md * Add model 2024-10-18-age_parser_en * Update 2024-10-18-age_parser_en.md * Add model 2024-10-18-date_matcher_en * Update 2024-10-18-date_matcher_en.md * Add model 2024-10-18-phone_parser_en * Update 2024-10-18-phone_parser_en.md * Add model 2024-10-18-medical_record_parser_en * Update 2024-10-18-medical_record_parser_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * Add model 2024-10-18-country_matcher_en (#1555) Co-authored-by: yigitgull <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557) Co-authored-by: Meryem1425 <[email protected]> * Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558) Co-authored-by: Cabir40 <[email protected]> * 2024-10-22-clinical_deidentification_docwise_wip_de (#1564) * Add model 2024-10-22-clinical_deidentification_docwise_wip_de * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-10-15-jsl_medm_q16_v1_en (#1551) * 2024-10-23-clinical_deidentification_v2_wip_en (#1568) * 2024-10-23-clinical_deidentification_v2_wip_en (#1569) * 2024-10-23-clinical_deidentification_v2_wip_en (#1570) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1572) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1571) * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * 2024-10-24-ner_deid_generic_docwise_de (#1573) * 2024-11-04-clinical_deidentification_docwise_wip_de (#1580) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * added new large model * renamed MedMX * 2024-11-04-clinical_deidentification_docwise_wip_de (#1582) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-04-clinical_deidentification_docwise_wip_de (#1581) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-06-clinical_deidentification_v2_wip_en (#1587) * 2024-11-06-clinical_deidentification_v2_wip_en (#1586) * 2024-11-06-clinical_deidentification_v2_wip_en (#1585) * Add model 2024-11-10-contextual_assertion_family_en (#1590) Co-authored-by: yigitgull <[email protected]> * 2024-11-12-drug_action_treatment_mapper_en (#1591) * 2024-11-19-medembed_base_rxnorm_augmented_en (#1610) * Add model 2024-11-19-medembed_base_rxnorm_augmented_en * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Add model 2024-11-19-medmebed_large_rxnorm_augmented_en * Update 2024-11-19-medmebed_large_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en (#1622) * Add model 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Add model 2024-11-27-clinical_deidentification_docwise_wip_v2_en (#1626) * 2024-11-28-ner_deid_generic_docwise_de (#1627) * 2024-11-28-snomed_term_resolver_pipeline_en (#1628) * 2024-11-28-date_matcher_en (#1629) * Add model 2024-11-28-date_matcher_en * Update 2024-11-28-date_matcher_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_clinical_large_en (#1625) * Add model 2024-11-27-zeroshot_ner_clinical_large_en * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Add model 2024-11-27-zeroshot_ner_clinical_medium_en * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Add model 2024-11-27-zeroshot_ner_oncology_medium_en * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_oncology_large_en * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * 2024-11-28-zeroshot_ner_generic_medium_en (#1630) * Add model 2024-11-28-zeroshot_ner_generic_medium_en * Add model 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_generic_large_en * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1631) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1632) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Update 2024-11-29-clinical_deidentification_docwise_wip_de.md * Update 2024-11-29-clinical_deidentification_docwise_large_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1634) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1633) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_de (#1635) * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de --------- Co-authored-by: Meryem1425 <[email protected]> * 2024-11-29-clinical_deidentification_docwise_large_wip_de (#1636) * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de --------- Co-authored-by: akrztrk <[email protected]> * 2024-11-29-zeroshot_ner_vop_medium_en (#1637) * Add model 2024-11-29-zeroshot_ner_vop_medium_en * Update 2024-11-29-zeroshot_ner_vop_medium_en.md * Add model 2024-11-30-zeroshot_ner_vop_large_en * Update 2024-11-30-zeroshot_ner_vop_large_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-02-sbiobertresolve_umls_major_concepts_en (#1643) * 2024-12-02-zeroshot_ner_ade_clinical_large_en (#1641) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1646) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1647) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1649) * 2024-12-04-ner_genes_phenotypes_wip_en (#1653) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1656) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1655) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1654) * 2024-12-05-sbiobertresolve_umls_drug_substance_en (#1657) * 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en (#1667) * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_large_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-06-biolordresolve_umls_general_concepts_en (#1660) * Add model 2024-12-06-biolordresolve_umls_general_concepts_en * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Add model 2024-12-06-umls_clinical_drugs_mapper_en * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Add model 2024-12-09-umls_icd10cm_mapper_en * Update 2024-12-09-umls_icd10cm_mapper_en.md * Add model 2024-12-10-icd10cm_umls_mapper_en * Update 2024-12-10-icd10cm_umls_mapper_en.md * Add model 2024-12-10-umls_cpt_mapper_en * update scala code * update scala code * update scala code * update scala code * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Update 2024-12-09-umls_icd10cm_mapper_en.md * Update 2024-12-10-icd10cm_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-10-cpt_umls_mapper_en * Update 2024-12-10-cpt_umls_mapper_en.md * Add model 2024-12-11-umls_rxnorm_mapper_en * Update 2024-12-11-umls_rxnorm_mapper_en.md * Add model 2024-12-11-rxnorm_umls_mapper_en * Update 2024-12-11-rxnorm_umls_mapper_en.md * Add model 2024-12-11-umls_snomed_mapper_en * Update 2024-12-11-umls_snomed_mapper_en.md * Update 2024-12-11-umls_snomed_mapper_en.md * Add model 2024-12-11-snomed_umls_mapper_en * Update 2024-12-11-snomed_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-11-umls_loinc_mapper_en * Update 2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-11-loinc_umls_mapper_en * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-umls_mesh_mapper_en * Update 2024-12-12-umls_mesh_mapper_en.md * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-mesh_umls_mapper_en * Update 2024-12-12-mesh_umls_mapper_en.md * Add model 2024-12-16-umls_disease_syndrome_mapper_en * Update 2024-12-16-umls_disease_syndrome_mapper_en.md * Add model 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en * Add model 2024-12-18-umls_drug_substance_mapper_en * Update 2024-12-18-umls_drug_substance_mapper_en.md * Add model 2024-12-18-umls_clinical_findings_mapper_en * Update 2024-12-18-umls_clinical_findings_mapper_en.md * Add model 2024-12-18-umls_major_concepts_mapper_en * Update 2024-12-18-umls_major_concepts_mapper_en.md * Update 2024-12-12-umls_mesh_mapper_en.md * Add model 2024-12-19-umls_loinc_mapper_en * Update 2024-12-19-umls_loinc_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-19-loinc_umls_mapper_en * Update 2024-12-19-loinc_umls_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-loinc_umls_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * 2024-12-19-medication_resolver_transform_pipeline_en (#1671) * 2024-12-19-medication_resolver_transform_pipeline_en (#1672) * 2024-12-19-medication_resolver_transform_pipeline_en (#1673) * 2025-01-01-zeroshot_ner_jsl_medium_en (#1680) * Add model 2025-01-01-zeroshot_ner_jsl_medium_en * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md * Add model 2025-01-01-zeroshot_ner_jsl_large_en * Update 2025-01-01-zeroshot_ner_jsl_large_en.md * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1681) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1682) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1683) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md * Add model 2025-01-06-zeroshot_ner_sdoh_medium_en * Update 2025-01-06-zeroshot_ner_sdoh_medium_en.md * Add model 2025-01-07-zeroshot_ner_sdoh_large_en * Update 2025-01-07-zeroshot_ner_sdoh_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-11-ner_genes_phenotypes_en (#1684) * Add model 2025-01-11-ner_genes_phenotypes_en * Update 2025-01-11-ner_genes_phenotypes_en.md * Update 2025-01-11-ner_genes_phenotypes_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-13-ner_cancer_types_en (#1686) * 2025-01-14-sbiobertresolve_HPO_en (#1687) * Add model 2025-01-14-sbiobertresolve_HPO_en * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Add model 2025-01-15-ner_oncology_biomarker_docwise_en * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1691) * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1692) * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1693) * 2025-01-16-assertion_genomic_abnormality_wip_en (#1690) * Add model 2025-01-16-assertion_genomic_abnormality_wip_en * Update 2025-01-16-assertion_genomic_abnormality_wip_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1700) * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1701) * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1702) * Add model 2025-02-03-AssertionBertForSequence_i2b2_3label_en (#1709) Co-authored-by: Cabir40 <[email protected]> * Update 2025-02-03-AssertionBertForSequence_i2b2_3label_en.md * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en (#1711) * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md * 2025-02-06-explain_clinical_doc_oncology_slim_en (#1712) * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2025-02-06-explain_clinical_doc_oncology_slim_en (#1713) * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2025-02-13-assertion_bert_classifier_jsl_slim_en (#1715) Co-authored-by: mehmetbutgul <[email protected]> * Add model 2025-02-14-biolordresolve_snomed_augmented_es (#1716) * Update 2025-02-14-biolordresolve_snomed_augmented_es.md JSL library version of python script is added. * 2025-02-19-sbiobertresolve_mesh_augmented_en (#1718) * Add model 2025-02-19-sbiobertresolve_mesh_augmented_en * Add model 2025-02-19-sbiobertresolve_mesh_veterinary_en * Add model 2025-02-19-sbiobertresolve_mesh_en * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_en.md * Update 2025-02-19-sbiobertresolve_mesh_en.md * Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md * Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-02-28-ner_oncology_wip_de (#1727) * 2025-03-08-assertion_bert_classification_oncology_en (#1730) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1734) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1735) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1737) * 2025-03-11-clinical_deidentification_subentity_enriched_ar (#1731) * Update 2025-02-28-ner_oncology_wip_de.md * Update 2025-02-28-biolordresolve_icd10gm_augmented_de.md * Add model 2025-03-18-clinical_deidentification_docwise_wip_en (#1740) Co-authored-by: Cabir40 <[email protected]> * 2025-03-12-contextual_assertion_possible_en (#1732) * 2025-03-18-clinical_deidentification_docwise_wip_en (#1742) * Add model 2025-03-18-clinical_deidentification_docwise_wip_en * Update 2025-03-18-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-03-18-clinical_deidentification_docwise_wip_en (#1741) * Add model 2025-03-18-clinical_deidentification_docwise_wip_en * Update 2025-03-18-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * Add model 2025-03-24-ner_deid_subentity_docwise_augmented_pipeline_v2_en (#1747) Co-authored-by: Cabir40 <[email protected]> * 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en (#1748) * Add model 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1749) * Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en (#1750) * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1751) * Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-27-ner_admission_discharge_benchmark_pipeline_en (#1755) * Add model 2025-03-27-ner_admission_discharge_benchmark_pipeline_en * added benchmark * Add model 2025-03-27-ner_body_part_benchmark_pipeline_en * Update 2025-03-27-ner_body_part_benchmark_pipeline_en.md * Add model 2025-03-27-ner_treatment_benchmark_pipeline_en * Add model 2025-03-27-ner_procedure_benchmark_pipeline_en * Add model 2025-03-27-ner_alcohol_use_benchmark_pipeline_en * Add model 2025-03-28-ner_substance_use_benchmark_pipeline_en * Add model 2025-03-28-ner_consumption_benchmark_pipeline_en * Add model 2025-03-28-ner_tobaco_use_benchmark_pipeline_en * Add model 2025-03-28-ner_grade_stage_severity_benchmark_pipeline_en * Add model 2025-03-28-ner_problem_benchmark_pipeline_en * Add model 2025-03-27-ner_drug_benchmark_pipeline_en * Add model 2025-03-27-ner_test_benchmark_pipeline_en * modelcards fixed * Add model 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en * Add model 2025-03-28-ner_medical_condition_disorder_benchmark_pipeline_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en.md * 2025-04-04-assertion_bert_classification_clinical_en (#1764) * Add model 2025-04-09-clinical_deidentification_docwise_benchmark_en (#1769) * Add model 2025-04-10-clinical_deidentification_docwise_benchmark_en (#1770) * 2025-04-28-assertion_bert_classification_jsl_en (#1779) --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: mehmetbutgul <[email protected]>

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * 2024-09-11-state_matcher_en (#1458) * Add model 2024-09-11-state_matcher_en * Update 2024-09-11-state_matcher_en.md FİXED CODE BLOCK VİEW --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-11-explain_clinical_doc_oncology_en (#1461) * 2024-09-11-explain_clinical_doc_oncology_en (#1462) * 2024-09-11-explain_clinical_doc_oncology_en (#1463) * 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464) * Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en * Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-09-12-sbiobertresolve_ndc_en (#1466) * Add model 2024-09-12-sbiobertresolve_ndc_en * Update 2024-09-12-sbiobertresolve_ndc_en.md typo fixed --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468) * removed md cart * 2024-09-13-ndc_resolver_pipeline_en (#1473) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1470) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1469) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1478) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Add model 2024-09-09-explain_clinical_doc_cancer_type_en * Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md This PP is the previous version of the cancer_type PP * Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1479) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1480) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * deleted md cards * 2024-09-17-oncology_biomarker_pipeline_en (#1487) * 2024-09-17-oncology_biomarker_pipeline_en (#1486) * 2024-09-17-oncology_biomarker_pipeline_en (#1485) * 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496) * 2024-09-24-clinical_deidentification_v2_wip_en (#1501) * Add model 2024-09-24-clinical_deidentification_v2_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Add model 2024-09-25-clinical_deidentification_docwise_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-25-ner_deid_aipii_en (#1503) * Add model 2024-09-25-ner_deid_aipii_en * Update 2024-09-25-ner_deid_aipii_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-clinical_deidentification_v2_wip_en (#1505) * Add model 2024-09-27-clinical_deidentification_v2_wip_en * Update 2024-09-27-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Add model 2024-09-29-email_matcher_en (#1512) Co-authored-by: yigitgull <[email protected]> * 2024-09-30-clinical_deidentification_v2_wip_en (#1516) * Add model 2024-10-01-jsl_medm_q8_v1_en (#1517) Co-authored-by: akrztrk <[email protected]> * Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518) Co-authored-by: akrztrk <[email protected]> * 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519) * Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1522) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1523) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1524) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525) * 2024-10-04-jsl_medm_q4_v1_en (#1529) * 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530) * 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535) * 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536) * 2024-10-08-jsl_medm_q16_v2_en (#1538) * 2024-10-08-loinc_resolver_pipeline_en (#1540) * Add model 2024-10-08-loinc_resolver_pipeline_en * Update 2024-10-08-loinc_resolver_pipeline_en.md * Update 2024-10-08-loinc_resolver_pipeline_en.md * Add model 2024-10-08-loinc_numeric_resolver_pipeline_en * Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-08-loinc_resolver_pipeline_en (#1539) * 2024-10-14-explain_clinical_doc_oncology_en (#1547) * 2024-10-14-explain_clinical_doc_oncology_en (#1548) * 2024-10-14-explain_clinical_doc_oncology_en (#1549) * 2024-10-17-ssn_parser_en (#1554) * Add model 2024-10-17-ssn_parser_en * Update 2024-10-17-ssn_parser_en.md * Add model 2024-10-17-account_parser_en * Update 2024-10-17-account_parser_en.md * Add model 2024-10-18-dln_parser_en * Update 2024-10-18-dln_parser_en.md * Add model 2024-10-18-plate_parser_en * Update 2024-10-18-plate_parser_en.md * Add model 2024-10-18-vin_parser_en * Update 2024-10-18-vin_parser_en.md * Add model 2024-10-18-license_parser_en * Update 2024-10-18-license_parser_en.md * Add model 2024-10-18-age_parser_en * Update 2024-10-18-age_parser_en.md * Add model 2024-10-18-date_matcher_en * Update 2024-10-18-date_matcher_en.md * Add model 2024-10-18-phone_parser_en * Update 2024-10-18-phone_parser_en.md * Add model 2024-10-18-medical_record_parser_en * Update 2024-10-18-medical_record_parser_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * Add model 2024-10-18-country_matcher_en (#1555) Co-authored-by: yigitgull <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557) Co-authored-by: Meryem1425 <[email protected]> * Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558) Co-authored-by: Cabir40 <[email protected]> * 2024-10-22-clinical_deidentification_docwise_wip_de (#1564) * Add model 2024-10-22-clinical_deidentification_docwise_wip_de * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-10-15-jsl_medm_q16_v1_en (#1551) * 2024-10-23-clinical_deidentification_v2_wip_en (#1568) * 2024-10-23-clinical_deidentification_v2_wip_en (#1569) * 2024-10-23-clinical_deidentification_v2_wip_en (#1570) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1572) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1571) * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * 2024-10-24-ner_deid_generic_docwise_de (#1573) * 2024-11-04-clinical_deidentification_docwise_wip_de (#1580) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * added new large model * renamed MedMX * 2024-11-04-clinical_deidentification_docwise_wip_de (#1582) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-04-clinical_deidentification_docwise_wip_de (#1581) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-06-clinical_deidentification_v2_wip_en (#1587) * 2024-11-06-clinical_deidentification_v2_wip_en (#1586) * 2024-11-06-clinical_deidentification_v2_wip_en (#1585) * Add model 2024-11-10-contextual_assertion_family_en (#1590) Co-authored-by: yigitgull <[email protected]> * 2024-11-12-drug_action_treatment_mapper_en (#1591) * 2024-11-19-medembed_base_rxnorm_augmented_en (#1610) * Add model 2024-11-19-medembed_base_rxnorm_augmented_en * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Add model 2024-11-19-medmebed_large_rxnorm_augmented_en * Update 2024-11-19-medmebed_large_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en (#1622) * Add model 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Add model 2024-11-27-clinical_deidentification_docwise_wip_v2_en (#1626) * 2024-11-28-ner_deid_generic_docwise_de (#1627) * 2024-11-28-snomed_term_resolver_pipeline_en (#1628) * 2024-11-28-date_matcher_en (#1629) * Add model 2024-11-28-date_matcher_en * Update 2024-11-28-date_matcher_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_clinical_large_en (#1625) * Add model 2024-11-27-zeroshot_ner_clinical_large_en * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Add model 2024-11-27-zeroshot_ner_clinical_medium_en * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Add model 2024-11-27-zeroshot_ner_oncology_medium_en * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_oncology_large_en * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * 2024-11-28-zeroshot_ner_generic_medium_en (#1630) * Add model 2024-11-28-zeroshot_ner_generic_medium_en * Add model 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_generic_large_en * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1631) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1632) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Update 2024-11-29-clinical_deidentification_docwise_wip_de.md * Update 2024-11-29-clinical_deidentification_docwise_large_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1634) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1633) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_de (#1635) * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de --------- Co-authored-by: Meryem1425 <[email protected]> * 2024-11-29-clinical_deidentification_docwise_large_wip_de (#1636) * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de --------- Co-authored-by: akrztrk <[email protected]> * 2024-11-29-zeroshot_ner_vop_medium_en (#1637) * Add model 2024-11-29-zeroshot_ner_vop_medium_en * Update 2024-11-29-zeroshot_ner_vop_medium_en.md * Add model 2024-11-30-zeroshot_ner_vop_large_en * Update 2024-11-30-zeroshot_ner_vop_large_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-02-sbiobertresolve_umls_major_concepts_en (#1643) * 2024-12-02-zeroshot_ner_ade_clinical_large_en (#1641) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1646) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1647) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1649) * 2024-12-04-ner_genes_phenotypes_wip_en (#1653) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1656) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1655) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1654) * 2024-12-05-sbiobertresolve_umls_drug_substance_en (#1657) * 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en (#1667) * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_large_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-06-biolordresolve_umls_general_concepts_en (#1660) * Add model 2024-12-06-biolordresolve_umls_general_concepts_en * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Add model 2024-12-06-umls_clinical_drugs_mapper_en * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Add model 2024-12-09-umls_icd10cm_mapper_en * Update 2024-12-09-umls_icd10cm_mapper_en.md * Add model 2024-12-10-icd10cm_umls_mapper_en * Update 2024-12-10-icd10cm_umls_mapper_en.md * Add model 2024-12-10-umls_cpt_mapper_en * update scala code * update scala code * update scala code * update scala code * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Update 2024-12-09-umls_icd10cm_mapper_en.md * Update 2024-12-10-icd10cm_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-10-cpt_umls_mapper_en * Update 2024-12-10-cpt_umls_mapper_en.md * Add model 2024-12-11-umls_rxnorm_mapper_en * Update 2024-12-11-umls_rxnorm_mapper_en.md * Add model 2024-12-11-rxnorm_umls_mapper_en * Update 2024-12-11-rxnorm_umls_mapper_en.md * Add model 2024-12-11-umls_snomed_mapper_en * Update 2024-12-11-umls_snomed_mapper_en.md * Update 2024-12-11-umls_snomed_mapper_en.md * Add model 2024-12-11-snomed_umls_mapper_en * Update 2024-12-11-snomed_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-11-umls_loinc_mapper_en * Update 2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-11-loinc_umls_mapper_en * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-umls_mesh_mapper_en * Update 2024-12-12-umls_mesh_mapper_en.md * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-mesh_umls_mapper_en * Update 2024-12-12-mesh_umls_mapper_en.md * Add model 2024-12-16-umls_disease_syndrome_mapper_en * Update 2024-12-16-umls_disease_syndrome_mapper_en.md * Add model 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en * Add model 2024-12-18-umls_drug_substance_mapper_en * Update 2024-12-18-umls_drug_substance_mapper_en.md * Add model 2024-12-18-umls_clinical_findings_mapper_en * Update 2024-12-18-umls_clinical_findings_mapper_en.md * Add model 2024-12-18-umls_major_concepts_mapper_en * Update 2024-12-18-umls_major_concepts_mapper_en.md * Update 2024-12-12-umls_mesh_mapper_en.md * Add model 2024-12-19-umls_loinc_mapper_en * Update 2024-12-19-umls_loinc_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-19-loinc_umls_mapper_en * Update 2024-12-19-loinc_umls_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-loinc_umls_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * 2024-12-19-medication_resolver_transform_pipeline_en (#1671) * 2024-12-19-medication_resolver_transform_pipeline_en (#1672) * 2024-12-19-medication_resolver_transform_pipeline_en (#1673) * 2025-01-01-zeroshot_ner_jsl_medium_en (#1680) * Add model 2025-01-01-zeroshot_ner_jsl_medium_en * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md * Add model 2025-01-01-zeroshot_ner_jsl_large_en * Update 2025-01-01-zeroshot_ner_jsl_large_en.md * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1681) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1682) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1683) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md * Add model 2025-01-06-zeroshot_ner_sdoh_medium_en * Update 2025-01-06-zeroshot_ner_sdoh_medium_en.md * Add model 2025-01-07-zeroshot_ner_sdoh_large_en * Update 2025-01-07-zeroshot_ner_sdoh_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-11-ner_genes_phenotypes_en (#1684) * Add model 2025-01-11-ner_genes_phenotypes_en * Update 2025-01-11-ner_genes_phenotypes_en.md * Update 2025-01-11-ner_genes_phenotypes_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-13-ner_cancer_types_en (#1686) * 2025-01-14-sbiobertresolve_HPO_en (#1687) * Add model 2025-01-14-sbiobertresolve_HPO_en * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Add model 2025-01-15-ner_oncology_biomarker_docwise_en * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1691) * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1692) * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1693) * 2025-01-16-assertion_genomic_abnormality_wip_en (#1690) * Add model 2025-01-16-assertion_genomic_abnormality_wip_en * Update 2025-01-16-assertion_genomic_abnormality_wip_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1700) * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1701) * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1702) * Add model 2025-02-03-AssertionBertForSequence_i2b2_3label_en (#1709) Co-authored-by: Cabir40 <[email protected]> * Update 2025-02-03-AssertionBertForSequence_i2b2_3label_en.md * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en (#1711) * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md * 2025-02-06-explain_clinical_doc_oncology_slim_en (#1712) * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2025-02-06-explain_clinical_doc_oncology_slim_en (#1713) * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2025-02-13-assertion_bert_classifier_jsl_slim_en (#1715) Co-authored-by: mehmetbutgul <[email protected]> * Add model 2025-02-14-biolordresolve_snomed_augmented_es (#1716) * Update 2025-02-14-biolordresolve_snomed_augmented_es.md JSL library version of python script is added. * 2025-02-19-sbiobertresolve_mesh_augmented_en (#1718) * Add model 2025-02-19-sbiobertresolve_mesh_augmented_en * Add model 2025-02-19-sbiobertresolve_mesh_veterinary_en * Add model 2025-02-19-sbiobertresolve_mesh_en * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_en.md * Update 2025-02-19-sbiobertresolve_mesh_en.md * Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md * Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-02-28-ner_oncology_wip_de (#1727) * 2025-03-08-assertion_bert_classification_oncology_en (#1730) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1734) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1735) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1737) * 2025-03-11-clinical_deidentification_subentity_enriched_ar (#1731) * Update 2025-02-28-ner_oncology_wip_de.md * Update 2025-02-28-biolordresolve_icd10gm_augmented_de.md * Add model 2025-03-18-clinical_deidentification_docwise_wip_en (#1740) Co-authored-by: Cabir40 <[email protected]> * 2025-03-12-contextual_assertion_possible_en (#1732) * 2025-03-18-clinical_deidentification_docwise_wip_en (#1742) * Add model 2025-03-18-clinical_deidentification_docwise_wip_en * Update 2025-03-18-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-03-18-clinical_deidentification_docwise_wip_en (#1741) * Add model 2025-03-18-clinical_deidentification_docwise_wip_en * Update 2025-03-18-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * Add model 2025-03-24-ner_deid_subentity_docwise_augmented_pipeline_v2_en (#1747) Co-authored-by: Cabir40 <[email protected]> * 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en (#1748) * Add model 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1749) * Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en (#1750) * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1751) * Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-27-ner_admission_discharge_benchmark_pipeline_en (#1755) * Add model 2025-03-27-ner_admission_discharge_benchmark_pipeline_en * added benchmark * Add model 2025-03-27-ner_body_part_benchmark_pipeline_en * Update 2025-03-27-ner_body_part_benchmark_pipeline_en.md * Add model 2025-03-27-ner_treatment_benchmark_pipeline_en * Add model 2025-03-27-ner_procedure_benchmark_pipeline_en * Add model 2025-03-27-ner_alcohol_use_benchmark_pipeline_en * Add model 2025-03-28-ner_substance_use_benchmark_pipeline_en * Add model 2025-03-28-ner_consumption_benchmark_pipeline_en * Add model 2025-03-28-ner_tobaco_use_benchmark_pipeline_en * Add model 2025-03-28-ner_grade_stage_severity_benchmark_pipeline_en * Add model 2025-03-28-ner_problem_benchmark_pipeline_en * Add model 2025-03-27-ner_drug_benchmark_pipeline_en * Add model 2025-03-27-ner_test_benchmark_pipeline_en * modelcards fixed * Add model 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en * Add model 2025-03-28-ner_medical_condition_disorder_benchmark_pipeline_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en.md * 2025-04-04-assertion_bert_classification_clinical_en (#1764) * Add model 2025-04-09-clinical_deidentification_docwise_benchmark_en (#1769) * Add model 2025-04-10-clinical_deidentification_docwise_benchmark_en (#1770) * 2025-04-28-assertion_bert_classification_jsl_en (#1779) * 2025-05-01-hpo_matcher_en (#1784) * Add model 2025-05-01-hpo_matcher_en * Add model 2025-05-01-hpo_mapper_en * Update 2025-05-01-hpo_mapper_en.md * Update 2025-05-01-hpo_matcher_en.md * Update 2025-05-01-hpo_mapper_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2025-05-02-stopwords_removal_hpo_en (#1785) * Add model 2025-05-02-stopwords_removal_hpo_en * Update 2025-05-02-stopwords_removal_hpo_en.md --------- Co-authored-by: mehmetbutgul <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * 2025-05-02-hpo_mapper_pipeline_en (#1786) * Add model 2025-05-02-hpo_mapper_pipeline_en * Update 2025-05-02-hpo_mapper_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-05-02-hpo_mapper_pipeline_en (#1788) * Add model 2025-05-02-hpo_mapper_pipeline_en * Update 2025-05-02-hpo_mapper_pipeline_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-05-02-hpo_mapper_pipeline_en (#1787) * Add model 2025-05-02-hpo_mapper_pipeline_en * Update 2025-05-02-hpo_mapper_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> --------- Co-authored-by: Cabir C <[email protected]> Co-authored-by: jsl-models <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: mehmetbutgul <[email protected]>

* 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * 2024-09-11-state_matcher_en (#1458) * Add model 2024-09-11-state_matcher_en * Update 2024-09-11-state_matcher_en.md FİXED CODE BLOCK VİEW --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-11-explain_clinical_doc_oncology_en (#1461) * 2024-09-11-explain_clinical_doc_oncology_en (#1462) * 2024-09-11-explain_clinical_doc_oncology_en (#1463) * 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464) * Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en * Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-09-12-sbiobertresolve_ndc_en (#1466) * Add model 2024-09-12-sbiobertresolve_ndc_en * Update 2024-09-12-sbiobertresolve_ndc_en.md typo fixed --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468) * removed md cart * 2024-09-13-ndc_resolver_pipeline_en (#1473) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1470) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1469) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1478) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Add model 2024-09-09-explain_clinical_doc_cancer_type_en * Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md This PP is the previous version of the cancer_type PP * Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1479) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1480) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * deleted md cards * 2024-09-17-oncology_biomarker_pipeline_en (#1487) * 2024-09-17-oncology_biomarker_pipeline_en (#1486) * 2024-09-17-oncology_biomarker_pipeline_en (#1485) * 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496) * 2024-09-24-clinical_deidentification_v2_wip_en (#1501) * Add model 2024-09-24-clinical_deidentification_v2_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Add model 2024-09-25-clinical_deidentification_docwise_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-25-ner_deid_aipii_en (#1503) * Add model 2024-09-25-ner_deid_aipii_en * Update 2024-09-25-ner_deid_aipii_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-clinical_deidentification_v2_wip_en (#1505) * Add model 2024-09-27-clinical_deidentification_v2_wip_en * Update 2024-09-27-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Add model 2024-09-29-email_matcher_en (#1512) Co-authored-by: yigitgull <[email protected]> * 2024-09-30-clinical_deidentification_v2_wip_en (#1516) * Add model 2024-10-01-jsl_medm_q8_v1_en (#1517) Co-authored-by: akrztrk <[email protected]> * Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518) Co-authored-by: akrztrk <[email protected]> * 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519) * Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1522) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1523) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1524) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525) * 2024-10-04-jsl_medm_q4_v1_en (#1529) * 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530) * 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535) * 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536) * 2024-10-08-jsl_medm_q16_v2_en (#1538) * 2024-10-08-loinc_resolver_pipeline_en (#1540) * Add model 2024-10-08-loinc_resolver_pipeline_en * Update 2024-10-08-loinc_resolver_pipeline_en.md * Update 2024-10-08-loinc_resolver_pipeline_en.md * Add model 2024-10-08-loinc_numeric_resolver_pipeline_en * Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-08-loinc_resolver_pipeline_en (#1539) * 2024-10-14-explain_clinical_doc_oncology_en (#1547) * 2024-10-14-explain_clinical_doc_oncology_en (#1548) * 2024-10-14-explain_clinical_doc_oncology_en (#1549) * 2024-10-17-ssn_parser_en (#1554) * Add model 2024-10-17-ssn_parser_en * Update 2024-10-17-ssn_parser_en.md * Add model 2024-10-17-account_parser_en * Update 2024-10-17-account_parser_en.md * Add model 2024-10-18-dln_parser_en * Update 2024-10-18-dln_parser_en.md * Add model 2024-10-18-plate_parser_en * Update 2024-10-18-plate_parser_en.md * Add model 2024-10-18-vin_parser_en * Update 2024-10-18-vin_parser_en.md * Add model 2024-10-18-license_parser_en * Update 2024-10-18-license_parser_en.md * Add model 2024-10-18-age_parser_en * Update 2024-10-18-age_parser_en.md * Add model 2024-10-18-date_matcher_en * Update 2024-10-18-date_matcher_en.md * Add model 2024-10-18-phone_parser_en * Update 2024-10-18-phone_parser_en.md * Add model 2024-10-18-medical_record_parser_en * Update 2024-10-18-medical_record_parser_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * Add model 2024-10-18-country_matcher_en (#1555) Co-authored-by: yigitgull <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557) Co-authored-by: Meryem1425 <[email protected]> * Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558) Co-authored-by: Cabir40 <[email protected]> * 2024-10-22-clinical_deidentification_docwise_wip_de (#1564) * Add model 2024-10-22-clinical_deidentification_docwise_wip_de * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-10-15-jsl_medm_q16_v1_en (#1551) * 2024-10-23-clinical_deidentification_v2_wip_en (#1568) * 2024-10-23-clinical_deidentification_v2_wip_en (#1569) * 2024-10-23-clinical_deidentification_v2_wip_en (#1570) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1572) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1571) * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * 2024-10-24-ner_deid_generic_docwise_de (#1573) * 2024-11-04-clinical_deidentification_docwise_wip_de (#1580) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * added new large model * renamed MedMX * 2024-11-04-clinical_deidentification_docwise_wip_de (#1582) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-04-clinical_deidentification_docwise_wip_de (#1581) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-06-clinical_deidentification_v2_wip_en (#1587) * 2024-11-06-clinical_deidentification_v2_wip_en (#1586) * 2024-11-06-clinical_deidentification_v2_wip_en (#1585) * Add model 2024-11-10-contextual_assertion_family_en (#1590) Co-authored-by: yigitgull <[email protected]> * 2024-11-12-drug_action_treatment_mapper_en (#1591) * 2024-11-19-medembed_base_rxnorm_augmented_en (#1610) * Add model 2024-11-19-medembed_base_rxnorm_augmented_en * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Add model 2024-11-19-medmebed_large_rxnorm_augmented_en * Update 2024-11-19-medmebed_large_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en (#1622) * Add model 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Add model 2024-11-27-clinical_deidentification_docwise_wip_v2_en (#1626) * 2024-11-28-ner_deid_generic_docwise_de (#1627) * 2024-11-28-snomed_term_resolver_pipeline_en (#1628) * 2024-11-28-date_matcher_en (#1629) * Add model 2024-11-28-date_matcher_en * Update 2024-11-28-date_matcher_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_clinical_large_en (#1625) * Add model 2024-11-27-zeroshot_ner_clinical_large_en * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Add model 2024-11-27-zeroshot_ner_clinical_medium_en * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Add model 2024-11-27-zeroshot_ner_oncology_medium_en * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_oncology_large_en * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * 2024-11-28-zeroshot_ner_generic_medium_en (#1630) * Add model 2024-11-28-zeroshot_ner_generic_medium_en * Add model 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_generic_large_en * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1631) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1632) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Update 2024-11-29-clinical_deidentification_docwise_wip_de.md * Update 2024-11-29-clinical_deidentification_docwise_large_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1634) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1633) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_de (#1635) * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de --------- Co-authored-by: Meryem1425 <[email protected]> * 2024-11-29-clinical_deidentification_docwise_large_wip_de (#1636) * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de --------- Co-authored-by: akrztrk <[email protected]> * 2024-11-29-zeroshot_ner_vop_medium_en (#1637) * Add model 2024-11-29-zeroshot_ner_vop_medium_en * Update 2024-11-29-zeroshot_ner_vop_medium_en.md * Add model 2024-11-30-zeroshot_ner_vop_large_en * Update 2024-11-30-zeroshot_ner_vop_large_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-02-sbiobertresolve_umls_major_concepts_en (#1643) * 2024-12-02-zeroshot_ner_ade_clinical_large_en (#1641) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1646) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1647) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1649) * 2024-12-04-ner_genes_phenotypes_wip_en (#1653) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1656) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1655) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1654) * 2024-12-05-sbiobertresolve_umls_drug_substance_en (#1657) * 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en (#1667) * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_large_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-06-biolordresolve_umls_general_concepts_en (#1660) * Add model 2024-12-06-biolordresolve_umls_general_concepts_en * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Add model 2024-12-06-umls_clinical_drugs_mapper_en * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Add model 2024-12-09-umls_icd10cm_mapper_en * Update 2024-12-09-umls_icd10cm_mapper_en.md * Add model 2024-12-10-icd10cm_umls_mapper_en * Update 2024-12-10-icd10cm_umls_mapper_en.md * Add model 2024-12-10-umls_cpt_mapper_en * update scala code * update scala code * update scala code * update scala code * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Update 2024-12-09-umls_icd10cm_mapper_en.md * Update 2024-12-10-icd10cm_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-10-cpt_umls_mapper_en * Update 2024-12-10-cpt_umls_mapper_en.md * Add model 2024-12-11-umls_rxnorm_mapper_en * Update 2024-12-11-umls_rxnorm_mapper_en.md * Add model 2024-12-11-rxnorm_umls_mapper_en * Update 2024-12-11-rxnorm_umls_mapper_en.md * Add model 2024-12-11-umls_snomed_mapper_en * Update 2024-12-11-umls_snomed_mapper_en.md * Update 2024-12-11-umls_snomed_mapper_en.md * Add model 2024-12-11-snomed_umls_mapper_en * Update 2024-12-11-snomed_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-11-umls_loinc_mapper_en * Update 2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-11-loinc_umls_mapper_en * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-umls_mesh_mapper_en * Update 2024-12-12-umls_mesh_mapper_en.md * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-mesh_umls_mapper_en * Update 2024-12-12-mesh_umls_mapper_en.md * Add model 2024-12-16-umls_disease_syndrome_mapper_en * Update 2024-12-16-umls_disease_syndrome_mapper_en.md * Add model 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en * Add model 2024-12-18-umls_drug_substance_mapper_en * Update 2024-12-18-umls_drug_substance_mapper_en.md * Add model 2024-12-18-umls_clinical_findings_mapper_en * Update 2024-12-18-umls_clinical_findings_mapper_en.md * Add model 2024-12-18-umls_major_concepts_mapper_en * Update 2024-12-18-umls_major_concepts_mapper_en.md * Update 2024-12-12-umls_mesh_mapper_en.md * Add model 2024-12-19-umls_loinc_mapper_en * Update 2024-12-19-umls_loinc_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-19-loinc_umls_mapper_en * Update 2024-12-19-loinc_umls_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-loinc_umls_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * 2024-12-19-medication_resolver_transform_pipeline_en (#1671) * 2024-12-19-medication_resolver_transform_pipeline_en (#1672) * 2024-12-19-medication_resolver_transform_pipeline_en (#1673) * 2025-01-01-zeroshot_ner_jsl_medium_en (#1680) * Add model 2025-01-01-zeroshot_ner_jsl_medium_en * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md * Add model 2025-01-01-zeroshot_ner_jsl_large_en * Update 2025-01-01-zeroshot_ner_jsl_large_en.md * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1681) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1682) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1683) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md * Add model 2025-01-06-zeroshot_ner_sdoh_medium_en * Update 2025-01-06-zeroshot_ner_sdoh_medium_en.md * Add model 2025-01-07-zeroshot_ner_sdoh_large_en * Update 2025-01-07-zeroshot_ner_sdoh_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-11-ner_genes_phenotypes_en (#1684) * Add model 2025-01-11-ner_genes_phenotypes_en * Update 2025-01-11-ner_genes_phenotypes_en.md * Update 2025-01-11-ner_genes_phenotypes_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-13-ner_cancer_types_en (#1686) * 2025-01-14-sbiobertresolve_HPO_en (#1687) * Add model 2025-01-14-sbiobertresolve_HPO_en * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Add model 2025-01-15-ner_oncology_biomarker_docwise_en * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1691) * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1692) * 2025-01-16-clinical_deidentification_docwise_benchmark_en (#1693) * 2025-01-16-assertion_genomic_abnormality_wip_en (#1690) * Add model 2025-01-16-assertion_genomic_abnormality_wip_en * Update 2025-01-16-assertion_genomic_abnormality_wip_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1700) * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1701) * 2025-01-24-clinical_deidentification_docwise_benchmark_en (#1702) * Add model 2025-02-03-AssertionBertForSequence_i2b2_3label_en (#1709) Co-authored-by: Cabir40 <[email protected]> * Update 2025-02-03-AssertionBertForSequence_i2b2_3label_en.md * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en (#1711) * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md * 2025-02-06-explain_clinical_doc_oncology_slim_en (#1712) * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2025-02-06-explain_clinical_doc_oncology_slim_en (#1713) * Add model 2025-02-06-explain_clinical_doc_oncology_slim_en * Update 2025-02-06-explain_clinical_doc_oncology_slim_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2025-02-13-assertion_bert_classifier_jsl_slim_en (#1715) Co-authored-by: mehmetbutgul <[email protected]> * Add model 2025-02-14-biolordresolve_snomed_augmented_es (#1716) * Update 2025-02-14-biolordresolve_snomed_augmented_es.md JSL library version of python script is added. * 2025-02-19-sbiobertresolve_mesh_augmented_en (#1718) * Add model 2025-02-19-sbiobertresolve_mesh_augmented_en * Add model 2025-02-19-sbiobertresolve_mesh_veterinary_en * Add model 2025-02-19-sbiobertresolve_mesh_en * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_augmented_en.md * Update 2025-02-19-sbiobertresolve_mesh_en.md * Update 2025-02-19-sbiobertresolve_mesh_en.md * Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md * Update 2025-02-19-sbiobertresolve_mesh_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-02-28-ner_oncology_wip_de (#1727) * 2025-03-08-assertion_bert_classification_oncology_en (#1730) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1734) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1735) * 2025-03-13-clinical_deidentification_nameAugmented_v3_en (#1737) * 2025-03-11-clinical_deidentification_subentity_enriched_ar (#1731) * Update 2025-02-28-ner_oncology_wip_de.md * Update 2025-02-28-biolordresolve_icd10gm_augmented_de.md * Add model 2025-03-18-clinical_deidentification_docwise_wip_en (#1740) Co-authored-by: Cabir40 <[email protected]> * 2025-03-12-contextual_assertion_possible_en (#1732) * 2025-03-18-clinical_deidentification_docwise_wip_en (#1742) * Add model 2025-03-18-clinical_deidentification_docwise_wip_en * Update 2025-03-18-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-03-18-clinical_deidentification_docwise_wip_en (#1741) * Add model 2025-03-18-clinical_deidentification_docwise_wip_en * Update 2025-03-18-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * Add model 2025-03-24-ner_deid_subentity_docwise_augmented_pipeline_v2_en (#1747) Co-authored-by: Cabir40 <[email protected]> * 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en (#1748) * Add model 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-24-ner_deid_nameAugmented_docwise_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1749) * Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en (#1750) * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en (#1751) * Add model 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en * Update 2025-03-25-ner_deid_nameAugmented_docwise_pipeline_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md * Add model 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en * Update 2025-03-25-ner_deid_nameAugmented_pipeline_v3_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-03-27-ner_admission_discharge_benchmark_pipeline_en (#1755) * Add model 2025-03-27-ner_admission_discharge_benchmark_pipeline_en * added benchmark * Add model 2025-03-27-ner_body_part_benchmark_pipeline_en * Update 2025-03-27-ner_body_part_benchmark_pipeline_en.md * Add model 2025-03-27-ner_treatment_benchmark_pipeline_en * Add model 2025-03-27-ner_procedure_benchmark_pipeline_en * Add model 2025-03-27-ner_alcohol_use_benchmark_pipeline_en * Add model 2025-03-28-ner_substance_use_benchmark_pipeline_en * Add model 2025-03-28-ner_consumption_benchmark_pipeline_en * Add model 2025-03-28-ner_tobaco_use_benchmark_pipeline_en * Add model 2025-03-28-ner_grade_stage_severity_benchmark_pipeline_en * Add model 2025-03-28-ner_problem_benchmark_pipeline_en * Add model 2025-03-27-ner_drug_benchmark_pipeline_en * Add model 2025-03-27-ner_test_benchmark_pipeline_en * modelcards fixed * Add model 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en * Add model 2025-03-28-ner_medical_condition_disorder_benchmark_pipeline_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2025-03-28-ner_symptom_or_sign_benchmark_pipeline_en.md * 2025-04-04-assertion_bert_classification_clinical_en (#1764) * Add model 2025-04-09-clinical_deidentification_docwise_benchmark_en (#1769) * Add model 2025-04-10-clinical_deidentification_docwise_benchmark_en (#1770) * 2025-04-28-assertion_bert_classification_jsl_en (#1779) * 2025-05-01-hpo_matcher_en (#1784) * Add model 2025-05-01-hpo_matcher_en * Add model 2025-05-01-hpo_mapper_en * Update 2025-05-01-hpo_mapper_en.md * Update 2025-05-01-hpo_matcher_en.md * Update 2025-05-01-hpo_mapper_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2025-05-02-stopwords_removal_hpo_en (#1785) * Add model 2025-05-02-stopwords_removal_hpo_en * Update 2025-05-02-stopwords_removal_hpo_en.md --------- Co-authored-by: mehmetbutgul <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * 2025-05-02-hpo_mapper_pipeline_en (#1786) * Add model 2025-05-02-hpo_mapper_pipeline_en * Update 2025-05-02-hpo_mapper_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-05-02-hpo_mapper_pipeline_en (#1788) * Add model 2025-05-02-hpo_mapper_pipeline_en * Update 2025-05-02-hpo_mapper_pipeline_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2025-05-02-hpo_mapper_pipeline_en (#1787) * Add model 2025-05-02-hpo_mapper_pipeline_en * Update 2025-05-02-hpo_mapper_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> * Update 2025-04-09-jsl_meds_text2soap_v1_en.md --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: mehmetbutgul <[email protected]>

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