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Tutorial on integrating single-cell multiome data and performing cell type annotation

Status: Open.

#20 In welch-lab/pyliger;

· Wonderangela123 opened on Jan 16, 2025

Export to Anndata (after integration)

Status: Open.

#19 In welch-lab/pyliger;

· DaminK opened on Nov 7, 2024

Plans to add UINMF?

Status: Open.

#18 In welch-lab/pyliger;

· LArnoldt opened on Sep 29, 2024

plot_gene_loadings error

Status: Open.

#16 In welch-lab/pyliger;

· kanghelen opened on May 7, 2024

Potential enhancement for using BPP NNLS solver

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In welch-lab/pyliger;

· mvfki opened on Feb 7, 2024

How to improving similarity between snRNA-seq and snATAC-seq nuclei, by tuning parameters like 'k', 'lambda'?

Status: Open.

#14 In welch-lab/pyliger;

· wangmeijiao opened on Jan 18, 2024

AttributeError: 'Liger' object has no attribute 'var_genes'

Status: Open.

#13 In welch-lab/pyliger;

· mumichae opened on Sep 6, 2023

remove umap.plot import in _umap.py

Status: Open.

#10 In welch-lab/pyliger;

· galicae opened on Mar 14, 2023

Starting from 10X matrix file

Status: Open.

#9 In welch-lab/pyliger;

· kokp2000 opened on Mar 7, 2023