Skip to content

Rely more on posterior #1171

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 10 commits into
base: develop
Choose a base branch
from
Open

Rely more on posterior #1171

Changes from 1 commit
Commits
Show all changes
10 commits
Select commit Hold shift + click to select a range
fb9e112
Update monitor to use functions from posterior
VisruthSK Oct 21, 2025
3371eac
Wrap posterior functions
VisruthSK Oct 21, 2025
1ef5c29
Deleted unexported functions
VisruthSK Oct 21, 2025
1e915bb
Fixed typo
VisruthSK Oct 21, 2025
bbbb54c
Added posterior as a dependency
VisruthSK Oct 22, 2025
90ae295
Don't use names from posterior::quantile2
VisruthSK Oct 24, 2025
4aca466
Add a snapshot test whose baseline values need to be set since I can'…
VisruthSK Oct 24, 2025
4605a6b
use fixed set of posterior draws in monitor test
jgabry Oct 24, 2025
6937428
respect `probs` argument and don't hardcode any internally
jgabry Oct 24, 2025
48bc313
update test and generate snapshot
jgabry Oct 24, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion rstan/rstan/R/monitor.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -305,7 +305,7 @@ monitor <- function(sims, warmup = floor(dim(sims)[1] / 2),
}

out <- as.data.frame(do.call(rbind, out))
probs_str <- names(posterior::quantile2(sims_i, probs = probs))
probs_str <- names(quantile(sims_i, probs = probs, na.rm = TRUE))
Copy link
Member

@jgabry jgabry Oct 24, 2025

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This isn't working correctly either, still not being printed. I will look into this.

str_quan <- paste0("Q", probs * 100)
str_quan2 <- paste0("Q", c(0.05, 0.5, 0.95) * 100)
str_mcse_quan <- paste0("MCSE_", str_quan)
Expand Down