Pkg.update("SpineOpt") may not work

[ptsavol]

Describe the bug
I had a Julia Environment with SpineOpt v0.9.2 installed. Trying to upgrade it to 0.10.0 using Pkg.update("SpineOpt") did nothing.

To Reproduce
See listing below.

Expected behavior
SpineOpt should have been updated to 0.10.0. Instead, the version remained in 0.9.2.

Desktop

• Which SpineOpt version? 0.9.2
• Which toolbox version? Latest master
• OS: Win11

Listing from cmd.exe running Julia v1.10

C:\data\JuliaProjects\SpineOptProject>c:\Users\ttepsa\AppData\Local\julias\julia-1.10\bin\julia.exe
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.10.5 (2024-08-27)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using Pkg

julia> Pkg.activate(".")
  Activating project at `C:\data\JuliaProjects\SpineOptProject`

julia> Pkg.installed()
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg c:\Users\ttepsa\AppData\Local\julias\julia-1.10\share\julia\stdlib\v1.10\Pkg\src\Pkg.jl:750
Dict{String, VersionNumber} with 3 entries:
  "PackageCompiler" => v"2.2.0"
  "IJulia"          => v"1.26.0"
  "SpineOpt"        => v"0.9.2"

julia> Pkg.update("SpineOpt")
    Updating registry at `C:\Users\ttepsa\.julia\registries\General.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject\Project.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject\Manifest.toml`

julia> Pkg.installed()
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg c:\Users\ttepsa\AppData\Local\julias\julia-1.10\share\julia\stdlib\v1.10\Pkg\src\Pkg.jl:750
Dict{String, VersionNumber} with 3 entries:
  "PackageCompiler" => v"2.2.0"
  "IJulia"          => v"1.26.0"
  "SpineOpt"        => v"0.9.2"

julia> Pkg.Registry.update()
    Updating registry at `C:\Users\ttepsa\.julia\registries\General.toml`

julia> Pkg.update("SpineOpt")
    Updating registry at `C:\Users\ttepsa\.julia\registries\General.toml`
   Resolving package versions...
  No Changes to `C:\data\JuliaProjects\SpineOptProject\Project.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject\Manifest.toml`

julia> Pkg.installed()
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg c:\Users\ttepsa\AppData\Local\julias\julia-1.10\share\julia\stdlib\v1.10\Pkg\src\Pkg.jl:750
Dict{String, VersionNumber} with 3 entries:
  "PackageCompiler" => v"2.2.0"
  "IJulia"          => v"1.26.0"
  "SpineOpt"        => v"0.9.2"

julia> Pkg.status("SpineOpt")
Project SpineOptProject v0.1.0
Status `C:\data\JuliaProjects\SpineOptProject\Project.toml`
⌃ [0d8fc150] SpineOpt v0.9.2
Info Packages marked with ⌃ have new versions available and may be upgradable.

julia> Pkg.update("SpineOpt")

    Updating registry at `C:\Users\ttepsa\.julia\registries\General.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject\Project.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject\Manifest.toml`

julia> Pkg.status()
Project SpineOptProject v0.1.0
Status `C:\data\JuliaProjects\SpineOptProject\Project.toml`
  [7073ff75] IJulia v1.26.0
  [9b87118b] PackageCompiler v2.2.0
⌃ [0d8fc150] SpineOpt v0.9.2
Info Packages marked with ⌃ have new versions available and may be upgradable.

julia> Pkg.update()
    Updating registry at `C:\Users\ttepsa\.julia\registries\General.toml`
   Installed libsodium_jll ─ v1.0.21+0
   Installed ZeroMQ_jll ──── v4.3.6+0
  Downloaded artifact: ZeroMQ
  Downloaded artifact: libsodium
    Updating `C:\data\JuliaProjects\SpineOptProject\Project.toml`
  [0d8fc150] ↑ SpineOpt v0.9.2 ⇒ v0.10.0
    Updating `C:\data\JuliaProjects\SpineOptProject\Manifest.toml`
  [31c24e10] ↑ Distributions v0.25.117 ⇒ v0.25.118
  [87dc4568] ↑ HiGHS v1.13.0 ⇒ v1.14.0
  [b8f27783] ↑ MathOptInterface v1.37.0 ⇒ v1.37.2
  [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1
  [0cda1612] ↑ SpineInterface v0.15.1 ⇒ v0.15.2
  [0d8fc150] ↑ SpineOpt v0.9.2 ⇒ v0.10.0
  [f269a46b] ↑ TimeZones v1.21.2 ⇒ v1.21.3
  [8f1865be] ↑ ZeroMQ_jll v4.3.5+3 ⇒ v4.3.6+0
  [a9144af2] ↑ libsodium_jll v1.0.20+3 ⇒ v1.0.21+0
Precompiling project...
  4 dependencies successfully precompiled in 5 seconds. 101 already precompiled.

julia> Pkg.installed()
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg c:\Users\ttepsa\AppData\Local\julias\julia-1.10\share\julia\stdlib\v1.10\Pkg\src\Pkg.jl:750
Dict{String, VersionNumber} with 3 entries:
  "PackageCompiler" => v"2.2.0"
  "IJulia"          => v"1.26.0"
  "SpineOpt"        => v"0.10.0"

julia>

In short, Pkg.update() did the trick eventually, but I was wondering if the problem that Pkg.update("SpineOpt") did not work was because SpineInterface was outdated and if so, should SpineInterface be automatically updated first? Otherwise, we probably need to revise the upgrade instructions on SpineOpt docs and I have to fix the Add/Update SpineOpt Wizard on Spine Toolbox side.

[tarskul]

It is very possible that the julia registration process for that version wasn't finished yet when you attempted the update (given that this issue and the version update are around the same time).

[ptsavol]

It is very possible that the julia registration process for that version wasn't finished yet when you attempted the update (given that this issue and the version update are around the same time).

Sure, but Pkg.status("SpineOpt") said that there's a new version available. Could somebody test Pkg.update("SpineOpt") with the SpineInterface version that I had and see if it the same thing happens. If the problem is not reproducable then we can just close this issue.

[tarskul]

I've made a separate environment where I explicitly installed SpineInterface v0.15.1. If I then install SpineOpt I get v0.9.2. If I then press update, I do get the expected versions. (the same happened when I installed SpineOpt v0.9.2 and manually changed spineinterface to 0.15.1) In that regard I don't see anything out of the ordinary. (see code below)

However, there are often issues with versions between SpineInterface and SpineOpt so we will briefly discuss this in one of the following developer meetings.

(jenv) pkg> status
Status `~/Downloads/jenv/Project.toml`
⌃ [0cda1612] SpineInterface v0.15.1
⌃ [0d8fc150] SpineOpt v0.9.2
Info Packages marked with ⌃ have new versions available and may be upgradable.

(jenv) pkg> update
    Updating registry at `~/.julia/registries/SpineRegistry`
    Updating git-repo `https://github.com/spine-tools/SpineJuliaRegistry`
    Updating registry at `~/.julia/registries/General.toml`
   Installed SpineOpt ─ v0.10.0
    Updating `~/Downloads/jenv/Project.toml`
  [0cda1612] ↑ SpineInterface v0.15.1 ⇒ v0.15.2
  [0d8fc150] ↑ SpineOpt v0.9.2 ⇒ v0.10.0
    Updating `~/Downloads/jenv/Manifest.toml`
  [0cda1612] ↑ SpineInterface v0.15.1 ⇒ v0.15.2
  [0d8fc150] ↑ SpineOpt v0.9.2 ⇒ v0.10.0
Precompiling project...
  1 dependency successfully precompiled in 4 seconds. 93 already precompiled.
        Info We haven't cleaned this depot up for a bit, running Pkg.gc()...
      Active manifest files: 17 found
      Active artifact files: 208 found
      Active scratchspaces: 12 found
     Deleted 19 package installations (17.669 MiB)
     Deleted 1 artifact installation (5.462 MiB)

(jenv) pkg> status
Status `~/Downloads/jenv/Project.toml`
  [0cda1612] SpineInterface v0.15.2
  [0d8fc150] SpineOpt v0.10.0

[ptsavol]

But you did Pkg.update() which I did say, that it works. Using Pkg.update("SpineOpt"), with SpineInterface v0.15.1 and SpineOpt v0.9.2 does not work, as you can see from the listing below. The reason that I'm nit-picking here is that, the Add/Update SpineOpt wizard in Spine Toolbox only does Pkg.update("SpineOpt"), which at the moment fails to update SpineOpt.

julia> Pkg.status()
Status `C:\data\JuliaProjects\SpineOptProject_test\Project.toml`
⌃ [0cda1612] SpineInterface v0.15.1
⌃ [0d8fc150] SpineOpt v0.9.2
Info Packages marked with ⌃ have new versions available and may be upgradable.

julia> Pkg.update("SpineOpt")
    Updating registry at `C:\Users\ttepsa\.julia\registries\General.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject_test\Project.toml`
  No Changes to `C:\data\JuliaProjects\SpineOptProject_test\Manifest.toml`

julia> Pkg.status()
Status `C:\data\JuliaProjects\SpineOptProject_test\Project.toml`
⌃ [0cda1612] SpineInterface v0.15.1
⌃ [0d8fc150] SpineOpt v0.9.2
Info Packages marked with ⌃ have new versions available and may be upgradable.

julia>

If I first do Pkg.update("SpineInterface") and then Pkg.update("SpineOpt"), it works. I'll add the SpineInterface update step to Spine Toolbox side.

[ptsavol]

This is fixed. When updating SpineOpt in Spine Toolbox, SpineInterface is updated first, then SpineOpt.

[tarskul]

Ah, I understand now. And indeed I seem to be able to reproduce that issue. I'll also update the text in the documentation of SpineOpt: