Add package: 2024_Higgins_MuraUP #168
Open
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Linked to #167
PR Checklist
new packageorpackage update).Add/update package: {package_name}.update. (Add to
Linked to #XXXabove.)If adding or updating a package:
SSF file Todo list
.ssf) for the requestedpackage.
.ssffile(s) matches the package name (i.e.packages/2023_my_package/2023_my_package.ssf)..ssffile MUST contain a new line at the end of the file.A check for this exists in the CI. This check should pass before
you continue with this list.
poseidon_IDs,udg, andlibrary_builtare filledand correct.
noteswhere necessary to explain any specialcases/judgement calls made for data entries.
Recipe creation and validation
@delphis-bot create recipeto this pull request to awakenPoseidon's trusty helper. (This should be repeated whenever changes are
made to the SSF file contents).
After a few second, Delphis-bot will add a number of files to the PR.
Using the 'Files changed' tab, check that all of the following files were added:
packages/{package_name}/{package_name}.tsvwas added to the PR.packages/{package_name}/{package_name}.tsv_patch.shwas addedto the PR from template.
packages/{package_name}/script_versions.txtwas added to thePR.
packages/{package_name}/{package_name}.configwas added to thePR from template.
Additional configuration
Additional configuration may be required when processing the data through nf-core/eager.
If you think this may be the case here, please either leave a comment about it in the PR or
add the relevant parameters within the
paramssection at the end of the package config file.For example, if the published data from the paper have internal barcodes, please mention that
in a comment, or provide the relevant nf-core/eager parameters in the
paramssection.have commented so in this PR (or added the relevant parameters within the
paramssection at the end of the package config file).