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@gregorgorjanc gregorgorjanc mentioned this pull request May 27, 2025
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Issue for this PR is at #1730

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codecov bot commented May 27, 2025

Codecov Report

❌ Patch coverage is 56.66667% with 13 lines in your changes missing coverage. Please review.
✅ Project coverage is 99.55%. Comparing base (6a9718e) to head (7e51c6b).
⚠️ Report is 11 commits behind head on main.

Files with missing lines Patch % Lines
stdpopsim/catalog/PruDul/demographic_models.py 0.00% 13 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1729      +/-   ##
==========================================
- Coverage   99.85%   99.55%   -0.31%     
==========================================
  Files         142      146       +4     
  Lines        4863     4893      +30     
  Branches      470      471       +1     
==========================================
+ Hits         4856     4871      +15     
- Misses          3       19      +16     
+ Partials        4        3       -1     

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jorgemasgomez and others added 19 commits October 6, 2025 11:46
@gregorgorjanc
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@jorgemasgomez good job on squashing the above points. Let me know when you are done with all the points and then we will QC this via the test file.

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In relation to the genome information, the v3 assembly of the ‘Texas’ cultivar is the most recent one. It is a phased genome assembly, therefore the reported genome length corresponds to the average length of both haplotypes.

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Regarding the demographic model, data points for population size over time were obtained by digitizing the line plot shown in Figure S8a.

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2 participants