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1. harpy harpy Public

   Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!

   Python 18 2

2. BioJulia/PopGen.jl BioJulia/PopGen.jl Public

   Population Genetics in Julia

   Julia 52 16

3. LepWrap LepWrap Public

   A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.

   Perl 15 1

4. bio-bin bio-bin Public

   Handy reusable bioinformatic scripts

   R 8 1

5. mimick mimick Public

   Linked-read sequence simulator

   Julia 1

6. djinn djinn Public

   Convert linked-read FASTQ/BAM files between formats, almost like magic.

   Python