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@parklab

Park Lab at Harvard Medical School

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  1. nozzle nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 67 19

  2. NGSCheckMate NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 137 56

  3. SigMA SigMA Public

    Mutational signature analysis for low statistics SNV data

    R 64 21

Repositories

Showing 10 of 45 repositories
  • parklab.github.io Public
    parklab/parklab.github.io’s past year of commit activity
    HTML 0 1 0 0 Updated Oct 31, 2025
  • SMaHT_SNV_COLO829BLT50_HAPMAP Public
    parklab/SMaHT_SNV_COLO829BLT50_HAPMAP’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Oct 27, 2025
  • NanoSeq_parkLab Public Forked from cancerit/NanoSeq

    Analysis software for Nanorate Sequencing (NanoSeq) experiments -- forked over from Sanger Institute

    parklab/NanoSeq_parkLab’s past year of commit activity
    C++ 0 AGPL-3.0 15 0 0 Updated Oct 9, 2025
  • EchoSV Public

    A novel tool for accurately merging haplotype-based SV calls and comparing SVs across reference genomes

    parklab/EchoSV’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Oct 9, 2025
  • spatial_sampling_analysis Public

    This repository contains analysis of spatially-resolved somatic mutations datasets.

    parklab/spatial_sampling_analysis’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Sep 17, 2025
  • r-scan2 Public

    R package supporting the SCAN2 pipeline

    parklab/r-scan2’s past year of commit activity
    R 0 4 1 0 Updated Aug 26, 2025
  • HiScanner Public
    parklab/HiScanner’s past year of commit activity
    C 7 MIT 2 2 0 Updated Aug 13, 2025
  • bamsnap Public
    parklab/bamsnap’s past year of commit activity
    HTML 123 MIT 27 20 0 Updated Aug 1, 2025
  • SPECIFICANCER_data Public
    parklab/SPECIFICANCER_data’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Jul 30, 2025
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    parklab/SCAN2’s past year of commit activity
    Python 15 6 12 0 Updated Jul 28, 2025
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