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    100 repositories

    • iblscripts

      Public
      Deployment scripts for ibl
      Jupyter Notebook
      •
      MIT License
      •9•3•7•2•Updated Sep 9, 2025Sep 9, 2025

    • ibllib

      Public
      IBL core shared libraries
      Python
      •
      MIT License
      •38•63•88•11•Updated Sep 9, 2025Sep 9, 2025

    • ibleatools

      Public
      Tools for electrophysiology analysis
      Python
      •1•0•9•1•Updated Sep 9, 2025Sep 9, 2025

    • iblenv

      Public
      Unified environment and Issue tracker for all IBL
      Jupyter Notebook
      •
      MIT License
      •10•14•56•0•Updated Sep 9, 2025Sep 9, 2025

    • iblrig

      Public
      Main repository for IBL rig code
      Python
      •
      MIT License
      •25•22•79•12•Updated Sep 9, 2025Sep 9, 2025

    • prior-localization

      Public
      Project seeking to localize encoding of the task prior in the brain
      Python
      •
      MIT License
      •2•4•12•2•Updated Sep 9, 2025Sep 9, 2025

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •1.1k•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • ibl-photometry

      Public
      A collection of methods and tools for experimental photometry data
      Python
      •
      MIT License
      •1•0•16•3•Updated Sep 8, 2025Sep 8, 2025

    • iblalyx

      Public
      Python
      •
      MIT License
      •0•0•5•0•Updated Sep 8, 2025Sep 8, 2025

    • mesoscope

      Public
      Code related to mesosocope experiments and analysis
      Python
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • bwm_dmn

      Public
      default mode network manifold analysis
      Python
      •2•0•0•1•Updated Sep 5, 2025Sep 5, 2025

    • project_extraction

      Public
      Extraction code for IBL satellite projects eg. U19 / personal projects
      Python
      •
      MIT License
      •1•0•6•3•Updated Sep 4, 2025Sep 4, 2025

    • ibl-alignment-gui

      Public
      Ephys alignment tool
      Python
      •0•0•1•0•Updated Sep 4, 2025Sep 4, 2025

    • bpod-core

      Public
      A Python library for communicating with the Bpod Finite State Machine
      bpod
      Python
      •
      MIT License
      •2•2•8•1•Updated Sep 4, 2025Sep 4, 2025

    • iblqt

      Public
      A collection of extensions to the Qt framework.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • iblapps

      Public
      pyqt5 dependent applications for IBL sessions
      Python
      •
      MIT License
      •17•28•19•1•Updated Aug 29, 2025Aug 29, 2025

    • paper-ephys-atlas

      Public
      Code related to the electrophysiology atlas paper
      Jupyter Notebook
      •
      MIT License
      •0•1•9•0•Updated Aug 26, 2025Aug 26, 2025

    • iblsre

      Public
      IBL Software Reliability Engineering
      Python
      •0•0•4•1•Updated Aug 20, 2025Aug 20, 2025

    • engage

      Public
      Apply Zoe's model to get engagement score for all BWM trials
      Python
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • ibl-neuropixel

      Public
      Collection of tools to handle Neuropixel 1.0 and 2.0 data
      Python
      •
      MIT License
      •4•17•4•2•Updated Jul 28, 2025Jul 28, 2025

    • reveal

      Public
      Tools to build reveal web-based presentations for scientific visualisations
      Python
      •
      MIT License
      •0•0•1•0•Updated Jul 28, 2025Jul 28, 2025

    • iblvideo

      Public
      Video analysis for the IBL dataset
      Python
      •
      MIT License
      •0•6•0•0•Updated Jul 23, 2025Jul 23, 2025

    • iblcourse

      Public
      Repository containing courses on data usage
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 22, 2025Jul 22, 2025

    • iblutil

      Public
      Small utilities with minimal dependencies
      Python
      •
      MIT License
      •3•0•0•0•Updated Jul 16, 2025Jul 16, 2025

    • ibl-aws

      Public
      Utilities to run processing on AWS Cloud
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 15, 2025Jul 15, 2025

    • brainregister

      Public
      Python package for elastix-based registration of tissues to atlases; with mouse brain registration to the Allen CCFv3 built-in.
      Python
      •
      GNU General Public License v3.0
      •2•4•2•1•Updated Jul 14, 2025Jul 14, 2025

    • IBL-to-nwb

      Public
      Conversion of IBL data to NWB format.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • paper-brain-wide-map

      Public
      Code related to the brainwide map paper
      Python
      •
      MIT License
      •4•19•6•1•Updated Jul 8, 2025Jul 8, 2025

    • ephys-atlas-web

      Public
      CSS
      •
      MIT License
      •0•0•2•0•Updated Jul 7, 2025Jul 7, 2025

    • iblatlas

      Public
      IBL atlas module
      Python
      •
      MIT License
      •1•2•3•1•Updated Jul 7, 2025Jul 7, 2025