[Usage question] - Difference between trajectory and insertion #143
Unanswered
GaelleChapuis
asked this question in
Q&A
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Uh oh!
There was an error while loading. Please reload this page.
Uh oh!
There was an error while loading. Please reload this page.
-
Describe the question you have
Asking and answering questions from @anne-urai here:
Q: What is the difference between insertion and trajectory?
A: An insertion is unique per physical probe insertion in the brain. But one insertion has several trajectories associated to it (from various provenance e.g. Planned or Micromanipulator), which is a straight-line set of coordinates.
Q: How to query for insertions / trajectories that are missing alignment?
A: To find insertions that are missing alignment (<2), use:
unresolved = one.alyx.rest('insertions', 'list', django='json__extended_qc__alignment_count__lt,2')
To find trajectories that are missing alignment, use:
unresolved = one.alyx.rest('trajectories', 'list', django='probe_insertion__json__extended_qc__alignment_count__lt,2')
Note the
probe_insertion__
addition in the query : this is because the trajectory is linked to the insertion.Closing this for now.
Beta Was this translation helpful? Give feedback.
All reactions