Repositories list

• noctua-models

  Public
  This is the data repository for the models created and edited with the Noctua tool stack for GO.

  annotationontologypathways+ 3geneontologynoctua-modelsgo-cam

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •3•11•34•2•Updated Sep 18, 2025Sep 18, 2025

• go-annotation

  Public
  This repository hosts the tracker for issues pertaining to GO annotations.

  ontologygenescuration+ 4geneontologyfunctional-annotationannotationannotations

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•38•508•2•Updated Sep 17, 2025Sep 17, 2025

• geneontology.github.io

  Public
  Repository for storing GO documentation, directly available through the general GO site

  documentationgeneontologygithubio

  SCSS

  •

  MIT License

  •9•7•25•13•Updated Sep 17, 2025Sep 17, 2025

• gocam-py

  Public
  Draft data model for GO-CAMs

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •2•3•7•2•Updated Sep 17, 2025Sep 17, 2025

• annotation-query

  Public
  This is a repository for doing the queries like go-annotation, but with nobody following it

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•35•0•Updated Sep 17, 2025Sep 17, 2025

• go-shapes

  Public
  Schema for Gene Ontology Causal Activity Models defined using RDF Shapes

  shexgeneontologynoctua+ 4noctua-modelsgo-camowlontology

  Shell

  •0•2•41•7•Updated Sep 17, 2025Sep 17, 2025

• go-ontology

  Public
  Source ontology files for the Gene Ontology

  goowlgene-ontology+ 5obogeneontologyfunctional-annotationobofoundryontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •43•236•671•61•Updated Sep 17, 2025Sep 17, 2025

• noctua-visual-pathway-editor

  Public
  HTML

  •0•0•62•0•Updated Sep 17, 2025Sep 17, 2025

• noctua-landing-page

  Public
  geneontologynoctuanoctua-models+ 1go-cam

  TypeScript

  •0•1•19•8•Updated Sep 16, 2025Sep 16, 2025

• pathways2GO

  Public
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

  pathwaysgeneontologybiopax+ 2go-camontology

  Java

  •0•12•115•0•Updated Sep 11, 2025Sep 11, 2025

• go-site

  Public
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

  documentationgene-ontologygeneontology+ 2yamlmetadata

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •89•46•244•46•Updated Sep 10, 2025Sep 10, 2025

• go-cam-browser

  Public
  Static site for exploring GO-CAM models

  TypeScript

  •0•0•1•0•Updated Sep 9, 2025Sep 9, 2025

• noctua-models-migrations

  Public
  Migration, change, update metadata for noctua-models

  Ruby

  •0•0•2•0•Updated Aug 28, 2025Aug 28, 2025

• noctua-standard-annotations

  Public
  TypeScript

  •0•0•16•0•Updated Aug 28, 2025Aug 28, 2025

• reactome-go-cams

  Public
  A set of GO-CAMs built automatically from Reactome pathways.

  pathwaysreactomegeneontology+ 3reactome-pathwaynoctua-modelsgo-cam

  0•1•2•1•Updated Aug 25, 2025Aug 25, 2025

• amigo

  Public
  AmiGO is the public interface for the Gene Ontology.

  browserannotationsontology+ 3genesgeneontologyfunctional-annotation

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •17•31•173•30•Updated Aug 22, 2025Aug 22, 2025

• minerva

  Public
  geneontologygafnoctua+ 2noctua-modelsconverter

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •9•7•59•9•Updated Aug 22, 2025Aug 22, 2025

• web-gocam

  Public
  GO-CAM site as an Angular 2+ Application

  annotationsgeneontologynoctua+ 2noctua-modelsgo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•11•7•Updated Aug 22, 2025Aug 22, 2025

• obographs

  Public
  Basic and Advanced OBO Graphs: specification and reference implementation

  jsongraphsowl+ 6gene-ontologyontologiesgeneontologyobofoundryontology-standardsontology

  Java

  •14•68•50•1•Updated Aug 20, 2025Aug 20, 2025

• pipeline

  Public
  Declarative pipeline for the Gene Ontology.

  geneontologypipeline

  BSD 3-Clause "New" or "Revised" License

  •5•5•86•1•Updated Aug 18, 2025Aug 18, 2025

• noctua_app_stack

  Public
  geneontologynoctuanoctua-models

  HCL

  •1•0•3•1•Updated Aug 10, 2025Aug 10, 2025

• go-stats

  Public
  Compute statistics & changes for both the GO ontology and annotations

  pipelineannotationsontology+ 2geneontologystatistics

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•2•Updated Aug 6, 2025Aug 6, 2025

• web-components

  Public
  EXPERIMENTAL Unified web component library

  gene-ontology

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Jul 29, 2025Jul 29, 2025

• devops-documentation

  Public
  General and specific documentation for geneontology DevOps

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•0•Updated Jul 26, 2025Jul 26, 2025

• go-cam-evidence-unwinder

  Public
  Find standard annotations with edges connected to multiple evidence nodes. The code will then duplicate ("unwind") the standard annotation for each evidence so that all edges have only have one evidence.

  Python

  •0•0•1•0•Updated Jul 23, 2025Jul 23, 2025

• neo

  Public
  noctua entity ontology

  annotationobogeneontology+ 3gafgo-camontology

  Perl

  •2•9•32•4•Updated Jul 8, 2025Jul 8, 2025

• pipeline-raw-go-cam

  Public
  [EXPERIMENTAL] Curation GO-CAMs re-published for internal use.

  BSD 3-Clause "New" or "Revised" License

  •0•0•3•0•Updated Jun 12, 2025Jun 12, 2025

• dbxrefs

  Public
  JavaScript library for translating CURIEs to URLs based on GO's db-xrefs registry

  TypeScript

  •0•0•1•0•Updated Jun 6, 2025Jun 6, 2025

• go-fastapi

  Public
  Python

  •3•7•7•0•Updated May 13, 2025May 13, 2025

• gopreprocess

  Public
  Python

  •

  MIT License

  •1•3•2•0•Updated May 12, 2025May 12, 2025