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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 274 60

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 59 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 60 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 19 5

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 30 7

Repositories

Showing 10 of 266 repositories
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Vue 30 BSD-3-Clause 7 205 (3 issues need help) 15 Updated Oct 29, 2025
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 19 BSD-3-Clause 5 38 8 Updated Oct 29, 2025
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 59 BSD-3-Clause 5 36 (1 issue needs help) 9 Updated Oct 29, 2025
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 750 BSD-3-Clause 100 65 10 Updated Oct 29, 2025
  • monarch-documentation Public

    Technical documentation for all Monarch applications, packages, services and related projects.

    monarch-initiative/monarch-documentation’s past year of commit activity
    Python 7 GPL-3.0 1 23 1 Updated Oct 29, 2025
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 28 BSD-3-Clause 5 16 2 Updated Oct 29, 2025
  • zfin-genotype-to-phenotype-ingest Public
    monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 29, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 274 CC-BY-4.0 60 348 (2 issues need help) 52 Updated Oct 28, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 8 4 72 4 Updated Oct 27, 2025
  • monarch-phenologs Public
    monarch-initiative/monarch-phenologs’s past year of commit activity
    Python 3 BSD-3-Clause 0 16 0 Updated Oct 27, 2025
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