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move instance segmentation to patch CLI #41
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…ustom loss functions
use keras utilities for one-hot encoding remove weights layer
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Solves issue #38 .
Purpose:
instance segmentationis categorized under thesegmentationCLI module, but it actually makes more sense to be withinextract patches. This is because instance segmentation does not require any DNN inference/training and is used primarily by the patching module. Plus, segmentation as implemented in dynamorph is not necessary -- one could achieve segmentation with normal CV methods.