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Unique IDs added to several CSVs #109

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Merged
jafeltra merged 3 commits into from
Apr 22, 2021
Merged

Unique IDs added to several CSVs #109

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a2f572d
Unique IDs added to several CSVs
julianxcarter Apr 19, 2021
46e4607
unique conditionIds added as well
julianxcarter Apr 21, 2021
dd3ca17
Example procedure added w/ prexisting condition
julianxcarter Apr 22, 2021
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2 changes: 1 addition & 1 deletion docs/adverse-event.csv
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mrn,adverseEventId,adverseEventCode,adverseEventCodeSystem,adverseEventDisplayText,suspectedCauseId,suspectedCauseType,seriousness,seriousnessCodeSystem,seriousnessDisplayText,category,categoryCodeSystem,categoryDisplayText,severity,actuality,studyId,effectiveDate,recordedDate
mrn-full-example,example-id-1,event-code,code-system,code-display,cause-id,resourceType,seriousness-code,code-system,seriousness-display,category-code,code-system,category-dislpay,mild,actual,id,1994-12-09,1994-12-09
mrn-two-category-example,example-id-1,event-code,code-system,code-display,cause-id,resourceType,seriousness-code,code-system,seriousness-display,category-code|category-code,code-system|code-system,category-display|category-display,mild,actual,id,1994-12-09,1994-12-09
mrn-two-category-example,example-id-2,event-code,code-system,code-display,cause-id,resourceType,seriousness-code,code-system,seriousness-display,category-code|category-code,code-system|code-system,category-display|category-display,mild,actual,id,1994-12-09,1994-12-09
mrn-minimal-example,,code-from-default-system,,,,,,,,,,,,,,1994-12-09,
4 changes: 2 additions & 2 deletions docs/observation.csv
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mrn,observationId,status,code,codeSystem,displayName,value,valueCodeSystem,effectiveDate,bodySite,laterality
mrn-1,example-id,example-status,example-code,example-system,example-name,example-value,example-system,YYYY-MM-DD,example-site,example-laterality
mrn-2,example-id,example-status,example-code,example-system,example-name,example-value,example-system,YYYY-MM-DD,example-site,example-laterality
mrn-1,example-id-1,example-status,example-code,example-system,example-name,example-value,example-system,YYYY-MM-DD,example-site,example-laterality
mrn-2,example-id-2,example-status,example-code,example-system,example-name,example-value,example-system,YYYY-MM-DD,example-site,example-laterality
4 changes: 2 additions & 2 deletions docs/procedure.csv
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mrn,procedureId,conditionId,status,code,codeSystem,displayName,reasonCode,reasonCodeSystem,reasonDisplayName,effectiveDate,bodySite,laterality,treatmentIntent
mrn-1,example-id,example-condition-id,example-status,example-code,example-system,example-name,example-reason-code,example-system,example-reason-display,YYYY-MM-DD,example-site,example-laterality,example-treatment-intent
mrn-2,example-id,example-condition-id,example-status,example-code,example-system,example-name,example-reason-code,example-system,example-reason-display,YYYY-MM-DD,example-site,example-laterality,example-treatment-intent
mrn-1,example-id-1,example-condition-id-1,example-status,example-code,example-system,example-name,example-reason-code,example-system,example-reason-display,YYYY-MM-DD,example-site,example-laterality,example-treatment-intent
mrn-2,example-id-2,example-condition-id-2,example-status,example-code,example-system,example-name,example-reason-code,example-system,example-reason-display,YYYY-MM-DD,example-site,example-laterality,example-treatment-intent
2 changes: 1 addition & 1 deletion test/sample-client-data/condition-information.csv
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mrn,conditionId,codeSystem,code,displayName,category,dateOfDiagnosis,clinicalStatus,verificationStatus,bodySite,laterality,histology
123,conditionId-1,http://snomed.info/sct,363346000,Breast Cancer,encounter-diagnosis,2020-07-12,relapse,confirmed,251007,7771000,2424003
456,conditionId-2,http://snomed.info/sct,363346000,Prostate Cancer,problem-list-item,2019-11-11,remission,confirmed,251007,24028007,2735009
789,conditionId-2,http://snomed.info/sct,363346000,Lung Cancer,encounter-diagnosis,2020-02-14,resolved,confirmed,251007,66459002,2985005
789,conditionId-3,http://snomed.info/sct,363346000,Lung Cancer,encounter-diagnosis,2020-02-14,resolved,confirmed,251007,66459002,2985005
6 changes: 3 additions & 3 deletions test/sample-client-data/observation-information.csv
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mrn,observationId,status,code,codeSystem,displayName,value,valueCodeSystem,effectiveDate,bodySite,laterality
123,observation-id,final,1695-6,http://loinc.org,,10828004,http://snomed.info/sct,2020-01-02,251007,66459002
456,observation-id,final,8302-2,http://loinc.org,Body height,66.89 [in_i],,2020-01-02,251007,66459002
789,observation-id,final,29463-7,http://loinc.org,Body Weight,185 [lb_av],,2020-01-02,251007,66459002
123,observation-id-1,final,1695-6,http://loinc.org,,10828004,http://snomed.info/sct,2020-01-02,251007,66459002
456,observation-id-2,final,8302-2,http://loinc.org,Body height,66.89 [in_i],,2020-01-02,251007,66459002
789,observation-id-3,final,29463-7,http://loinc.org,Body Weight,185 [lb_av],,2020-01-02,251007,66459002
7 changes: 4 additions & 3 deletions test/sample-client-data/procedure-information.csv
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mrn,procedureId,conditionId,status,code,codeSystem,displayName,reasonCode,reasonCodeSystem,reasonDisplayName,effectiveDate,bodySite,laterality,treatmentIntent
123,procedure-id,condition-id,completed,152198000,http://snomed.info/sct,Brachytherapy (procedure),363346000,http://snomed.info/sct,Malignant tumor,2020-01-01,41224006,51440002,373808002
456,procedure-id,condition-id,in-progress,174337000,http://snomed.info/sct,Destruction of lesion,363346000,http://snomed.info/sct,Malignant tumor,2020-01-12,41224006,51440002,373808002
789,procedure-id,condition-id,completed,172043006,http://snomed.info/sct,Total mastectomy,363346000,http://snomed.info/sct,Malignant tumor,2020-06-30,41224006,51440002,373808002
123,procedure-id-1,condition-id-1,completed,152198000,http://snomed.info/sct,Brachytherapy (procedure),363346000,http://snomed.info/sct,Malignant tumor,2020-01-01,41224006,51440002,373808002
456,procedure-id-2,condition-id-2,in-progress,174337000,http://snomed.info/sct,Destruction of lesion,363346000,http://snomed.info/sct,Malignant tumor,2020-01-12,41224006,51440002,373808002
789,procedure-id-3,condition-id-3,completed,172043006,http://snomed.info/sct,Total mastectomy,363346000,http://snomed.info/sct,Malignant tumor,2020-06-30,41224006,51440002,373808002
789,procedure-id-4,condition-id-3,in-progress,10611004,http://snomed.info/sct,Teleradiotherapy protons (procedure),363346000,http://snomed.info/sct,Malignant tumor,2020-01-12,41224006,51440002,373808002
6 changes: 3 additions & 3 deletions test/sample-client-data/staging-information.csv
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mrn,conditionId,stageGroup,t,n,m,type,stagingSystem,stagingCodeSystem,effectiveDate
123,conditionId-1,3C,cT3,cN3,cM0,Clinical,C146985,http://ncimeta.nci.nih.gov,2020-01-01
456,conditionId-2,3C,cT3,cN3,cM0,Clinical,443830009,http://snomed.info/sct,2020-01-01
789,conditionId-2,3C,,cN3,cM0,Clinical,444256004,http://snomed.info/sct,2020-01-02
789,conditionId-2,3C,cT3,,cM0,Clinical,,,2020-01-03
789,conditionId-2,3C,cT3,cN3,,Clinical,258235000,http://snomed.info/sct,2020-01-04
789,conditionId-3,3C,,cN3,cM0,Clinical,444256004,http://snomed.info/sct,2020-01-02
789,conditionId-3,3C,cT3,,cM0,Clinical,,,2020-01-03
789,conditionId-3,3C,cT3,cN3,,Clinical,258235000,http://snomed.info/sct,2020-01-04