Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Changes in v4.7.1
Add CLEARSWI argument help message for --qsm-input
Update compile targets

Changes in v4.7.0
possibility to supply pre-calculated qsm instead of phase for CLEARSWI
CLEARSWI uses TGV by default for QSM

Changes in v4.6.1
Fix version number

Changes in v4.6.0
CLEARSWI + QSM.jl -> fix a bug when not supplying a qsm mask
use julia 1.10; use fixed dependency versions (reproducible compilation)

Changes in v4.5.3
ROMEO: Add phase_var option for B0 combination

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path
Accidently published as v4.5.1

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Changes in v4.7.0
possibility to supply pre-calculated qsm instead of phase for CLEARSWI
CLEARSWI uses TGV by default for QSM

Changes in v4.6.1
Fix version number

Changes in v4.6.0
CLEARSWI + QSM.jl -> fix a bug when not supplying a qsm mask
use julia 1.10; use fixed dependency versions (reproducible compilation)

Changes in v4.5.3
ROMEO: Add phase_var option for B0 combination

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path
Accidently published as v4.5.1

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Changes in v4.6.1
Fix version number

Changes in v4.6.0
CLEARSWI + QSM.jl -> fix a bug when not supplying a qsm mask
use julia 1.10; use fixed dependency versions (reproducible compilation)

Changes in v4.5.3
ROMEO: Add phase_var option for B0 combination

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path
Accidently published as v4.5.1

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Changes in v4.6.0
CLEARSWI + QSM.jl -> fix a bug when not supplying a qsm mask
use julia 1.10; use fixed dependency versions (reproducible compilation)

Changes in v4.5.3
ROMEO: Add phase_var option for B0 combination

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path
Accidently published as v4.5.1

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Changes in v4.5.3
ROMEO: Add phase_var option for B0 combination

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path
Accidently published as v4.5.1

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Changes in v4.5.3
ROMEO: Add phase_var option for B0 combination

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path
Accidently published as v4.5.1

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

New Feature in v4.5.2
Matlab: option to specify the ROMEO/CLEARSWI executable path

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

Bug fix in v4.5.1
ROMEO B0: Fix issue with magnitude/R2* contrast leaking into B0

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

New Features in v4.5.0
ROMEO: Writes out B0_snr
ROMEO: Option to change weighting for B0 combination

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI

Includes executables for ROMEO, CLEAR-SWI, MCPC-3D-S coil combination, Homogeneity Correction and ROMEO masking
Warning: The MacOS version has compatiblity problems. Please use the julia command line version of ROMEO instead

New Features in v4.4.1
ROMEO: Add fix GE option
ROMEO: --correct-global now corrects multi-echo data when using --individual-unwrapping

Changes in v4.3.0
Option to fix GE phase, if it was saved with slice jumps
CLEARSWI: Option for mIP number of slice selection
ROMEO in Sepia: Fix argument parsing
ROMEO masking: argument change --no-phase-rescale instead of --no-rescale

Changes in v4.2.2
Homogeneity correction should work with different FoVs as well (small animal scans)

Changes in v4.2.1
Output citations.txt file

New features in v4.2
Romeo Masking

New features in v4.1
Homogeneity Correction

Changes in v4.0
structure of repositories
matlab issue should be fixed

v3.6.6
ROMEO works for 2D data

v3.6.5
Julia 1.8 -> Julia 1.9
compiled for additional specific platforms

Minor changes in v3.6.x
Bugfix - The automatically created mask failed in high-noise cases
Bugfix2 - New robustmask algorithm should solve high-noise case and keep similar values to v3.5.6 in default case
Bugfix - coil combination in ROMEO didn't use the provided magnitude
Bugfix - ROMEO.m write temporary nifti files with voxel_size information
Improvement - mcpc3ds speedup
Improvement - consistent version number across tools

New feature in v3.6
Option to use QSM processing in CLEAR-SWI