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BasCoD : Systematic Background Selection for Enhanced Contrastive Dimension Reduction

ELECT diagram

BasCoD Usage

Preparation

First of all, before cloning the MINTsC github package, go to the right directory that you would like to implement MINTsC. In the cmd terminal, do

cd {BasCoD directory}

then go on to the next step. {BasCoD directory} could be for example /storage10/kwangmoon/MINTsC.

1. Repository clone

For cloning the github repository, again on the cmd terminal, run the linux code

git clone https://github.com/keleslab/BasCoD.git

For R, we need the requirements as below :

2. Install/load required R packages

In R, run those codes that download the required packages for running BasCoD.

install.packages('MASS')

Details about implementing codes can be found in the Tutorial of this github, which uses the Abid et al.2018 Mice protein data as a tutorial.

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