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44 changes: 41 additions & 3 deletions _pages/plugins/EasyFiji_plugin.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,9 +9,47 @@ categories: [Image processing and vistualization]
source-url: https://github.com/chenli-git/FijiGui
---

## Overview
please check github link for relevant info
https://github.com/chenli-git/FijiGui
## Welcome to EasyFiji
please check [Github link](https://github.com/chenli-git/FijiGui) for relevant info

**EasyFiji** is a graphical user interface for fluorescence image display and processing in Fiji.
<p align="center">
<img src="https://github.com/chenli-git/FijiGui/blob/main/media/Gui_layout.png" width="600">
</p>

## Download options:
* Download via Github:
1. [Click here to download ⬇️](https://github.com/chenli-git/FijiGui/raw/main/target/EasyFiji_2-1.2.0.jar)
2. After downloading, copy the `.jar` file into your **Fiji.app/plugins/** folder.
3. Restart Fiji.
---
* Download via the ImageJ Update Site:
1. Launch Fiji and navigate to Help > Update.. in the menu bar.
2. In the updater window, click Manage Update sites and Search for "EasyFiji" and click "Apply and Close".
3. Restart Fiji.

## Quick start
* [Tutorial video](https://www.youtube.com/watch?v=MzzeFybe4ZY)
* Procotol paper (To be continued).

## Dependencies
EasyFiji is fully compatiable with native Fiji.
EasyFiji is compatible with ImageJ but requires Bioformats and Kymograph builder plugins to be installed separately for some functions.

## Sample images

Example images used in the paper [Source image repo](https://github.com/chenli-git/EasyFiji_figures):

* [Fluorescence two-channel displays](https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig2_INPUT.tif)
* [Fluorescence grayscale(DIC) display](https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig4_DIC_INPUT.tif)
* [Fluorescence grayscale(EM) display](https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig4_EM_INPUT.tif)
* [Colocalization display](https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig3_INPUT.tif)
* [Axial bleach correction](https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig5_ORG_INPUT.tif)
* [Temporal bleach correction](https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig5_TCELLS_INPUT.tif)

## Additional Help
* For 'how to' questions please post to our Image.sc thread.
* For issues or feature requests, please open an issue on [GitHub repository](https://github.com/chenli-git/FijiGui/issues).

## Reference

Binary file added media/plugins/EasyFiji_layout.png
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