GenomIO

Project exploring the use of LLMs to fill the gaps in genomic sequencing

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
LLMs/nucleotide-env		LLMs/nucleotide-env
data		data
gap-filler-agents		gap-filler-agents
notebook		notebook
rag_corpus		rag_corpus
.gitignore		.gitignore
Inference-DNABERT2.py		Inference-DNABERT2.py
Inference-GROVER.py		Inference-GROVER.py
Inference-gena-lm.py		Inference-gena-lm.py
LICENSE		LICENSE
README.md		README.md
contig_accessions_species.csv		contig_accessions_species.csv
download_genomes_2.sh		download_genomes_2.sh
gen_gap_filler.py		gen_gap_filler.py
gen_gap_filler_rag.py		gen_gap_filler_rag.py
get_top_species.py		get_top_species.py
identify_species_from_accessions.py		identify_species_from_accessions.py
inference-NT-Test_seq.py		inference-NT-Test_seq.py
models_evaluation.py		models_evaluation.py
results_AP012051.1_no_rag.csv		results_AP012051.1_no_rag.csv
results_AP012051.1_rag.csv		results_AP012051.1_rag.csv
top_species.csv		top_species.csv

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