feat: entrypoint work pt 4

[sgammon]

Summary

Continued general work toward new entrypoint, via Clikt and Rust. For the first time, Elide can actually be run through the CLI entrypoint using this new setup.

Pass ELIDE_EXPERIMENTAL=true to enable this new code path. No options or arguments are supported yet.

• Continued work on our native Rust layer
• Many build fixes, simplification of native library build-and-test
• Initial support at build-time for Python stuff (venv, Pip deps, Ruff, etc.)

Changelog

• feat(base): optimized rust routines for encodings
• feat(base): build under no_std
• feat(model): model crate initial structure
• feat(sqlite): implement rust sqlite api layer
• feat(project): new project crate
• fix: sqlite symbol access from umbrella
• fix: don't strip cargo outputs
• fix: many fixes for builder crates
• fix: don't move around third party libs
• fix: clean for zlib and sqlite
• fix: sqlite build flags aren't making it in
• fix: rename core crate to base
• fix: dynamic/static library builds for crates
• fix(sqlite): loading of native sqlite libs in native image
• chore: run cargo test with make test
• chore: add some basic jvm and native encoding benchmarks
• chore: merge cli-bridge module into cli
• chore: rewrite CliNativeBridge in kotlin
• chore: initial build wiring for protocol models in rust
• chore: makefile support for ccache and sccache
• chore: cargo fuzz support
• chore: run cargo update
• chore: run clippy
• chore: run fmt
• chore: update module pins, baselines
• chore: update verification metadata + lockfiles
• chore: update kotlinx benchmark → 0.4.11
• chore: update gradle → 8.9
• chore: update kotlin → 2.0.10-RC
• chore: update ksp → 2.0.10-RC-1.0.23

[sgammon]

need to exclude these from being formatted by biome

[codecov]

Codecov Report

Attention: Patch coverage is 71.10390% with 178 lines in your changes missing coverage. Please review.

Project coverage is 53.18%. Comparing base (4e85082) to head (4c42b15).

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1084      +/-   ##
==========================================
+ Coverage   48.19%   53.18%   +4.99%     
==========================================
  Files         394      405      +11     
  Lines       13653    14207     +554     
  Branches     2339     2394      +55     
==========================================
+ Hits         6580     7556     +976     
+ Misses       6361     5898     -463     
- Partials      712      753      +41     

Flag	Coverage Δ
gradle	?
jvm	53.18% <71.10%> (+4.99%)	⬆️
lib	53.18% <71.10%> (+4.99%)	⬆️
native	79.39% <79.61%> (?)
plugin	?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files	Coverage Δ
crates/base/src/crc.rs	100.00% <100.00%> (ø)
...ckages/cli/src/main/kotlin/elide/tool/cli/Elide.kt	36.79% <ø> (ø)
crates/entry/src/bin/elide.rs	70.00% <83.33%> (ø)
...c/main/kotlin/elide/tool/cli/AbstractSubcommand.kt	63.93% <90.00%> (+9.23%)	⬆️
...otlin/elide/tool/cli/cmd/tool/ToolInvokeCommand.kt	1.89% <0.00%> (ø)
crates/model/src/lang.rs	92.59% <92.59%> (ø)
crates/project/src/config.rs	0.00% <0.00%> (ø)
.../main/kotlin/elide/tool/cli/AbstractToolCommand.kt	62.31% <0.00%> (-4.85%)	⬇️
...in/elide/runtime/plugins/AbstractLanguagePlugin.kt	0.00% <0.00%> (ø)
crates/deps/src/catalog.rs	0.00% <0.00%> (ø)
... and 9 more

... and 27 files with indirect coverage changes

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[socket-security]

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Package	New capabilities	Transitives	Size	Publisher

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[sonarqubecloud]

Quality Gate passed

Issues
6 New issues
0 Accepted issues

Measures
0 Security Hotspots
2.5% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud