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@draeger-lab

Dräger Lab

Data Analytics and Bioinformatics Research Group within the Institute of Computer Science of the Martin Luther University Halle-Wittenberg

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  1. EscherConverter EscherConverter Public

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    Java 16 10

  2. ModelPolisher ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    Java 23 8

  3. SBMLme SBMLme Public

    Encoding ME models in SBML

    Java 7 2

  4. refinegems refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    Python 16 2

  5. SPECIMEN SPECIMEN Public

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

    Jupyter Notebook 5 2

Repositories

Showing 10 of 42 repositories
  • refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    draeger-lab/refinegems’s past year of commit activity
    Python 16 MIT 2 22 (4 issues need help) 0 Updated Jan 7, 2026
  • OptSolvX Public

    Provides a unified and flexible Java interface for mathematical optimization using multiple solver backends.

    draeger-lab/OptSolvX’s past year of commit activity
    Java 2 MIT 0 1 2 Updated Dec 14, 2025
  • SPECIMEN Public

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

    draeger-lab/SPECIMEN’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 2 20 (6 issues need help) 1 Updated Dec 2, 2025
  • SBSCL Public

    The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

    draeger-lab/SBSCL’s past year of commit activity
    HTML 25 LGPL-3.0 19 20 (3 issues need help) 7 Updated Oct 24, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    draeger-lab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,718 0 0 Updated Oct 9, 2025
  • GEM_Tutorial Public

    This repository contains the data, Jupyter Notebooks and setup for a workshop on the toolbox ``refineGEMs`` and the workflow collection ``SPECIMEN``.

    draeger-lab/GEM_Tutorial’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Sep 22, 2025
  • MassChargeCuration Public

    Python module to automatically curate the mass and charge assignments for metabolites in a metabolic model.

    draeger-lab/MassChargeCuration’s past year of commit activity
    Jupyter Notebook 5 3 3 1 Updated Sep 15, 2025
  • SBOannotator Public

    SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

    draeger-lab/SBOannotator’s past year of commit activity
    Python 8 GPL-3.0 4 1 3 Updated Jul 28, 2025
  • EscherConverter Public

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    draeger-lab/EscherConverter’s past year of commit activity
    Java 16 MIT 10 12 (1 issue needs help) 0 Updated Jul 9, 2025
  • .github Public
    draeger-lab/.github’s past year of commit activity
    0 0 0 0 Updated Jun 27, 2025
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