Remove byte-order marks from all dependency files

[jpinz]

What are you trying to accomplish?

We are now removing the byte-order mark prefix ("\uFEFF") if it exists at the beginning of the dependency_file content.

This fixes inconsistencies where some files were saved with BOM but aren't able to be parsed by certain ecosystems.

Anything you want to highlight for special attention from reviewers?

How will you know you've accomplished your goal?

Checklist

• I have run the complete test suite to ensure all tests and linters pass.
• I have thoroughly tested my code changes to ensure they work as expected, including adding additional tests for new functionality.
• I have written clear and descriptive commit messages.
• I have provided a detailed description of the changes in the pull request, including the problem it addresses, how it fixes the problem, and any relevant details about the implementation.
• I have ensured that the code is well-documented and easy to understand.