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slicer-annotation-workflow

Annotation Workflow Summary

1. Install 3D Slicer

Download and install 3D Slicer 5.8.1.

2. Run the Annotation Launcher

Use the appropriate script for your system:

  • macOS: run_annotation.command
  • Windows: run_annotation.bat

3. Perform Annotations in 3D Slicer

Create the following Markups as per the radiology report:

  • Point — for single localised findings.
  • ROI (Region of Interest) — for lesions or treated areas.
  • Line — to measure the longest visible axis if specified in the report.

4. Logging Progress

After annotating each case:

  • Open the log.csv file located in your fold’s directory.
  • Update the Done column for each completed case.

You can find more details about the instructions and videos in OneDrive folder

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