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Hello,
I think I have found a bug in your code. In pymot.py, line 238, where is the overlap computed? I think that there should be something like this before this line:
rect_groundtruth = Rect(groundtruths[gt_index])
rect_hypothesis = Rect(hypotheses[hypo_index])
overlap = rect_groundtruth.overlap(rect_hypothesis)
Am I right?
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