-
-
Notifications
You must be signed in to change notification settings - Fork 79
Closed
Description
I try running using Sundials
, however, it does not happen, this is the error, but I am unsure what it means:
Precompiling Sundials
✗ Sundials
0 dependencies successfully precompiled in 3 seconds. 93 already precompiled.
ERROR: The following 1 direct dependency failed to precompile:
Sundials [c3572dad-4567-51f8-b174-8c6c989267f4]
Failed to precompile Sundials [c3572dad-4567-51f8-b174-8c6c989267f4] to "/home/torkelloman/.julia/compiled/v1.10/Sundials/jl_2iPHIj".
ERROR: LoadError: InitError: could not load library "/home/torkelloman/.julia/artifacts/cb7fc2801ca0133a5bdea4bc4585d07c08284cfa/lib/libsundials_sunlinsolklu.so"
libklu.so.1: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:117
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl ./libdl.jl:116
[3] macro expansion
@ Sundials_jll ~/.julia/packages/JLLWrappers/pG9bm/src/products/library_generators.jl:63 [inlined]
[4] __init__()
@ Sundials_jll ~/.julia/packages/Sundials_jll/rXn1i/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:93
[5] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1128
[6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1116
[7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
@ Base ./loading.jl:1061
[8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
@ Base ./loading.jl:1575
[9] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:1932
[10] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1806
[11] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[12] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[13] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1797
[14] macro expansion
@ Base ./loading.jl:1784 [inlined]
[15] macro expansion
@ Base ./lock.jl:267 [inlined]
[16] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1747
[17] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[18] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[19] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1740
[20] include
@ Base ./Base.jl:489 [inlined]
[21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2216
[22] top-level scope
@ stdin:3
during initialization of module Sundials_jll
in expression starting at /home/torkelloman/.julia/packages/Sundials/G2RH1/src/Sundials.jl:3
in expression starting at stdin:3
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types ~/.julia/juliaup/julia-1.10.0-beta2+0.x64.linux.gnu/share/julia/stdlib/v1.10/Pkg/src/Types.jl:69
[2] precompile(ctx::Pkg.Types.Context, pkgs::Vector{…}; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, timing::Bool, _from_loading::Bool, kwargs::@Kwargs{…})
@ Pkg.API ~/.julia/juliaup/julia-1.10.0-beta2+0.x64.linux.gnu/share/julia/stdlib/v1.10/Pkg/src/API.jl:1577
[3] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::@Kwargs{_from_loading::Bool})
@ Pkg.API ~/.julia/juliaup/julia-1.10.0-beta2+0.x64.linux.gnu/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
[4] precompile
@ Pkg.API ~/.julia/juliaup/julia-1.10.0-beta2+0.x64.linux.gnu/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
[5] #precompile#114
@ Pkg.API ~/.julia/juliaup/julia-1.10.0-beta2+0.x64.linux.gnu/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined]
[6] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:1957
[7] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1806
[8] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[9] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[10] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:1797
[11] macro expansion
@ Base ./loading.jl:1784 [inlined]
[12] macro expansion
@ Base ./lock.jl:267 [inlined]
[13] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:1747
[14] #invoke_in_world#3
@ Base ./essentials.jl:921 [inlined]
[15] invoke_in_world
@ Base ./essentials.jl:918 [inlined]
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:1740
[17] eval
@ Base ./boot.jl:383 [inlined]
[18] include_string(mapexpr::typeof(REPL.softscope), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2070
[19] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@Kwargs{})
@ Base ./essentials.jl:887
[20] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base ./essentials.jl:884
[21] inlineeval(m::Module, code::String, code_line::Int64, code_column::Int64, file::String; softscope::Bool)
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/eval.jl:261
[22] (::VSCodeServer.var"#67#72"{…})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/eval.jl:181
[23] withpath(f::VSCodeServer.var"#67#72"{…}, path::String)
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/repl.jl:274
[24] (::VSCodeServer.var"#66#71"{…})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/eval.jl:179
[25] hideprompt(f::VSCodeServer.var"#66#71"{…})
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/repl.jl:38
[26] (::VSCodeServer.var"#65#70"{…})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/eval.jl:150
[27] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[28] with_logger
@ VSCodeServer ./logging.jl:627 [inlined]
[29] (::VSCodeServer.var"#64#69"{VSCodeServer.ReplRunCodeRequestParams})()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/eval.jl:253
[30] #invokelatest#2
@ Base ./essentials.jl:887 [inlined]
[31] invokelatest(::Any)
@ Base ./essentials.jl:884
[32] (::VSCodeServer.var"#62#63")()
@ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.54.2/scripts/packages/VSCodeServer/src/eval.jl:34
Some type information was truncated. Use `show(err)` to see complete types.
I tried ]build Sundials
and that didn't help. I tried to create an entirely clean directory with nothing more, and then it worked. Here is the full Project.toml file:
[deps]
BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
DiffEqDevTools = "f3b72e0c-5b89-59e1-b016-84e28bfd966d"
NonlinearProblemLibrary = "b7050fa9-e91f-4b37-bcee-a89a063da141"
NonlinearSolve = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
NonlinearSolveMINPACK = "c100e077-885d-495a-a2ea-599e143bf69d"
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344"
SciMLNLSolve = "e9a6253c-8580-4d32-9898-8661bb511710"
SimpleNonlinearSolve = "727e6d20-b764-4bd8-a329-72de5adea6c7"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
[compat]
BenchmarkTools = "1"
DiffEqDevTools = "2"
NonlinearProblemLibrary = "0.1"
NonlinearSolve = "2"
NonlinearSolveMINPACK = "0.1"
Plots = "1"
SciMLBenchmarks = "0.1"
SciMLNLSolve = "0.1"
SimpleNonlinearSolve = "0.1"
StaticArrays = "1"
Sundials = "4.19.5"
this is on Julia 1.10
Metadata
Metadata
Assignees
Labels
No labels