piezo2_branching_point_analysis

Scripts for skeletonization and branching point analysis

run branching point analysis

python main.py --in_file <path-to-image-file> --mask_cleaned <path-to-segmentation-mask> --dilation_factor 7 --skel_scale 7

python visualize_for_cleanup.py --image <path-to-image-file>

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
README.md		README.md
main.py		main.py
manual_roots.py		manual_roots.py
requirements.txt		requirements.txt
utils.py		utils.py
visualize_for_cleanup.py		visualize_for_cleanup.py