2024-06-17-ner_profiling_sdoh_en #1274
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* 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#926) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-31-sbiobertresolve_snomed_conditions_en (#925) * Add model 2024-01-31-sbiobertresolve_snomed_conditions_en * Update 2024-01-31-sbiobertresolve_snomed_conditions_en.md * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#927) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-01-ncit_resolver_pipeline_en (#932) * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-01-rxcui_resolver_pipeline_en (#933) * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * 2024-02-02-icdo_resolver_pipeline_en (#934) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#935) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#936) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-05-explain_clinical_doc_radiology_en (#940) * Add model 2024-02-05-explain_clinical_doc_radiology_en * Update 2024-02-05-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * 2024-02-05-sbiobertresolve_snomed_drug_en (#941) * Add model 2024-02-05-sbiobertresolve_snomed_drug_en * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Add model 2024-02-05-sbiobertresolve_snomed_bodyStructure_en * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-06-sbiobertresolve_snomed_findings_en (#946) * Add model 2024-02-06-sbiobertresolve_snomed_findings_en * Update 2024-02-06-sbiobertresolve_snomed_findings_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted snomed model cards * 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en (#948) * Add model 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-08-clinical_deidentification_obfuscation_medium_en (#949) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#950) * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#951) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#952) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#953) * Add model 2024-02-09-clinical_deidentification_obfuscation_small_en * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#954) * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted small and medıum deıd pipeline * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * 2024-02-12-ner_deid_name_multilingual_clinical_xx (#956) * 2024-02-13-ner_snomed_term_en (#957) * 2024-02-13-bert_sequence_classifier_biomarker_en (#958) * 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en (#961) * Add model 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-14-sbiobertresolve_snomed_auxConcepts_en (#962) * 2024-02-15-umls_loinc_mapper_en (#966) * Add model 2024-02-15-umls_loinc_mapper_en * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]>
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* 2024-02-13-ner_snomed_term_en (#957) * 2024-02-13-bert_sequence_classifier_biomarker_en (#958) * 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en (#961) * Add model 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-14-sbiobertresolve_snomed_auxConcepts_en (#962) * 2024-02-15-umls_loinc_mapper_en (#966) * Add model 2024-02-15-umls_loinc_mapper_en * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]>
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* 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]>
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* 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]>
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* 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * 2024-09-11-state_matcher_en (#1458) * Add model 2024-09-11-state_matcher_en * Update 2024-09-11-state_matcher_en.md FİXED CODE BLOCK VİEW --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-11-explain_clinical_doc_oncology_en (#1461) * 2024-09-11-explain_clinical_doc_oncology_en (#1462) * 2024-09-11-explain_clinical_doc_oncology_en (#1463) * 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464) * Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en * Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-09-12-sbiobertresolve_ndc_en (#1466) * Add model 2024-09-12-sbiobertresolve_ndc_en * Update 2024-09-12-sbiobertresolve_ndc_en.md typo fixed --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468) * removed md cart * 2024-09-13-ndc_resolver_pipeline_en (#1473) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1470) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1469) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1478) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Add model 2024-09-09-explain_clinical_doc_cancer_type_en * Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md This PP is the previous version of the cancer_type PP * Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1479) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1480) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * deleted md cards * 2024-09-17-oncology_biomarker_pipeline_en (#1487) * 2024-09-17-oncology_biomarker_pipeline_en (#1486) * 2024-09-17-oncology_biomarker_pipeline_en (#1485) --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: gpirge <[email protected]>
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* 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * 2024-09-11-state_matcher_en (#1458) * Add model 2024-09-11-state_matcher_en * Update 2024-09-11-state_matcher_en.md FİXED CODE BLOCK VİEW --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-11-explain_clinical_doc_oncology_en (#1461) * 2024-09-11-explain_clinical_doc_oncology_en (#1462) * 2024-09-11-explain_clinical_doc_oncology_en (#1463) * 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464) * Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en * Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-09-12-sbiobertresolve_ndc_en (#1466) * Add model 2024-09-12-sbiobertresolve_ndc_en * Update 2024-09-12-sbiobertresolve_ndc_en.md typo fixed --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468) * removed md cart * 2024-09-13-ndc_resolver_pipeline_en (#1473) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1470) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1469) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1478) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Add model 2024-09-09-explain_clinical_doc_cancer_type_en * Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md This PP is the previous version of the cancer_type PP * Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1479) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1480) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * deleted md cards * 2024-09-17-oncology_biomarker_pipeline_en (#1487) * 2024-09-17-oncology_biomarker_pipeline_en (#1486) * 2024-09-17-oncology_biomarker_pipeline_en (#1485) * 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496) * 2024-09-24-clinical_deidentification_v2_wip_en (#1501) * Add model 2024-09-24-clinical_deidentification_v2_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Add model 2024-09-25-clinical_deidentification_docwise_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-25-ner_deid_aipii_en (#1503) * Add model 2024-09-25-ner_deid_aipii_en * Update 2024-09-25-ner_deid_aipii_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-clinical_deidentification_v2_wip_en (#1505) * Add model 2024-09-27-clinical_deidentification_v2_wip_en * Update 2024-09-27-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Add model 2024-09-29-email_matcher_en (#1512) Co-authored-by: yigitgull <[email protected]> * 2024-09-30-clinical_deidentification_v2_wip_en (#1516) * Add model 2024-10-01-jsl_medm_q8_v1_en (#1517) Co-authored-by: akrztrk <[email protected]> * Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518) Co-authored-by: akrztrk <[email protected]> * 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519) * Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1522) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1523) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1524) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525) * 2024-10-04-jsl_medm_q4_v1_en (#1529) * 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530) * 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535) * 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536) * 2024-10-08-jsl_medm_q16_v2_en (#1538) * 2024-10-08-loinc_resolver_pipeline_en (#1540) * Add model 2024-10-08-loinc_resolver_pipeline_en * Update 2024-10-08-loinc_resolver_pipeline_en.md * Update 2024-10-08-loinc_resolver_pipeline_en.md * Add model 2024-10-08-loinc_numeric_resolver_pipeline_en * Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-08-loinc_resolver_pipeline_en (#1539) * 2024-10-14-explain_clinical_doc_oncology_en (#1547) * 2024-10-14-explain_clinical_doc_oncology_en (#1548) * 2024-10-14-explain_clinical_doc_oncology_en (#1549) * 2024-10-17-ssn_parser_en (#1554) * Add model 2024-10-17-ssn_parser_en * Update 2024-10-17-ssn_parser_en.md * Add model 2024-10-17-account_parser_en * Update 2024-10-17-account_parser_en.md * Add model 2024-10-18-dln_parser_en * Update 2024-10-18-dln_parser_en.md * Add model 2024-10-18-plate_parser_en * Update 2024-10-18-plate_parser_en.md * Add model 2024-10-18-vin_parser_en * Update 2024-10-18-vin_parser_en.md * Add model 2024-10-18-license_parser_en * Update 2024-10-18-license_parser_en.md * Add model 2024-10-18-age_parser_en * Update 2024-10-18-age_parser_en.md * Add model 2024-10-18-date_matcher_en * Update 2024-10-18-date_matcher_en.md * Add model 2024-10-18-phone_parser_en * Update 2024-10-18-phone_parser_en.md * Add model 2024-10-18-medical_record_parser_en * Update 2024-10-18-medical_record_parser_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * Add model 2024-10-18-country_matcher_en (#1555) Co-authored-by: yigitgull <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557) Co-authored-by: Meryem1425 <[email protected]> * Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558) Co-authored-by: Cabir40 <[email protected]> * 2024-10-22-clinical_deidentification_docwise_wip_de (#1564) * Add model 2024-10-22-clinical_deidentification_docwise_wip_de * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-10-15-jsl_medm_q16_v1_en (#1551) * 2024-10-23-clinical_deidentification_v2_wip_en (#1568) * 2024-10-23-clinical_deidentification_v2_wip_en (#1569) * 2024-10-23-clinical_deidentification_v2_wip_en (#1570) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1572) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1571) * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * 2024-10-24-ner_deid_generic_docwise_de (#1573) --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: gpirge <[email protected]>
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Jan 16, 2025
* 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * Update 2024-09-09-explain_clinical_doc_vop_small_en.md * 2024-09-11-state_matcher_en (#1458) * Add model 2024-09-11-state_matcher_en * Update 2024-09-11-state_matcher_en.md FİXED CODE BLOCK VİEW --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-11-explain_clinical_doc_oncology_en (#1461) * 2024-09-11-explain_clinical_doc_oncology_en (#1462) * 2024-09-11-explain_clinical_doc_oncology_en (#1463) * 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464) * Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en * Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-09-12-sbiobertresolve_ndc_en (#1466) * Add model 2024-09-12-sbiobertresolve_ndc_en * Update 2024-09-12-sbiobertresolve_ndc_en.md typo fixed --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468) * removed md cart * 2024-09-13-ndc_resolver_pipeline_en (#1473) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1470) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-13-ndc_resolver_pipeline_en (#1469) * Add model 2024-09-13-ndc_resolver_pipeline_en * Update 2024-09-13-ndc_resolver_pipeline_en.md * Update 2024-09-13-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1478) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Add model 2024-09-09-explain_clinical_doc_cancer_type_en * Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md This PP is the previous version of the cancer_type PP * Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1479) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-16-oncology_biomarker_pipeline_en (#1480) * Add model 2024-09-16-oncology_biomarker_pipeline_en * Update 2024-09-16-oncology_biomarker_pipeline_en.md * Add model 2024-09-16-explain_clinical_doc_cancer_type_en * Update 2024-09-16-explain_clinical_doc_cancer_type_en.md * Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * deleted md cards * 2024-09-17-oncology_biomarker_pipeline_en (#1487) * 2024-09-17-oncology_biomarker_pipeline_en (#1486) * 2024-09-17-oncology_biomarker_pipeline_en (#1485) * 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496) * 2024-09-24-clinical_deidentification_v2_wip_en (#1501) * Add model 2024-09-24-clinical_deidentification_v2_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Add model 2024-09-25-clinical_deidentification_docwise_wip_en * Update 2024-09-24-clinical_deidentification_v2_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md * Update 2024-09-25-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-25-ner_deid_aipii_en (#1503) * Add model 2024-09-25-ner_deid_aipii_en * Update 2024-09-25-ner_deid_aipii_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-clinical_deidentification_v2_wip_en (#1505) * Add model 2024-09-27-clinical_deidentification_v2_wip_en * Update 2024-09-27-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508) * Add model 2024-09-27-explain_clinical_doc_sdoh_small_en * Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Add model 2024-09-29-email_matcher_en (#1512) Co-authored-by: yigitgull <[email protected]> * 2024-09-30-clinical_deidentification_v2_wip_en (#1516) * Add model 2024-10-01-jsl_medm_q8_v1_en (#1517) Co-authored-by: akrztrk <[email protected]> * Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518) Co-authored-by: akrztrk <[email protected]> * 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519) * Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md * Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521) * Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1522) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1523) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-03-clinical_deidentification_docwise_wip_en (#1524) * Add model 2024-10-03-clinical_deidentification_docwise_wip_en * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en * Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md * Update 2024-10-03-clinical_deidentification_docwise_wip_en.md * Add model 2024-10-03-clinical_deidentification_v2_wip_en * Update 2024-10-03-clinical_deidentification_v2_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526) * 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525) * 2024-10-04-jsl_medm_q4_v1_en (#1529) * 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530) * 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535) * 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536) * 2024-10-08-jsl_medm_q16_v2_en (#1538) * 2024-10-08-loinc_resolver_pipeline_en (#1540) * Add model 2024-10-08-loinc_resolver_pipeline_en * Update 2024-10-08-loinc_resolver_pipeline_en.md * Update 2024-10-08-loinc_resolver_pipeline_en.md * Add model 2024-10-08-loinc_numeric_resolver_pipeline_en * Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-10-08-loinc_resolver_pipeline_en (#1539) * 2024-10-14-explain_clinical_doc_oncology_en (#1547) * 2024-10-14-explain_clinical_doc_oncology_en (#1548) * 2024-10-14-explain_clinical_doc_oncology_en (#1549) * 2024-10-17-ssn_parser_en (#1554) * Add model 2024-10-17-ssn_parser_en * Update 2024-10-17-ssn_parser_en.md * Add model 2024-10-17-account_parser_en * Update 2024-10-17-account_parser_en.md * Add model 2024-10-18-dln_parser_en * Update 2024-10-18-dln_parser_en.md * Add model 2024-10-18-plate_parser_en * Update 2024-10-18-plate_parser_en.md * Add model 2024-10-18-vin_parser_en * Update 2024-10-18-vin_parser_en.md * Add model 2024-10-18-license_parser_en * Update 2024-10-18-license_parser_en.md * Add model 2024-10-18-age_parser_en * Update 2024-10-18-age_parser_en.md * Add model 2024-10-18-date_matcher_en * Update 2024-10-18-date_matcher_en.md * Add model 2024-10-18-phone_parser_en * Update 2024-10-18-phone_parser_en.md * Add model 2024-10-18-medical_record_parser_en * Update 2024-10-18-medical_record_parser_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * Add model 2024-10-18-country_matcher_en (#1555) Co-authored-by: yigitgull <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557) Co-authored-by: Meryem1425 <[email protected]> * Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558) Co-authored-by: Cabir40 <[email protected]> * 2024-10-22-clinical_deidentification_docwise_wip_de (#1564) * Add model 2024-10-22-clinical_deidentification_docwise_wip_de * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-10-15-jsl_medm_q16_v1_en (#1551) * 2024-10-23-clinical_deidentification_v2_wip_en (#1568) * 2024-10-23-clinical_deidentification_v2_wip_en (#1569) * 2024-10-23-clinical_deidentification_v2_wip_en (#1570) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1572) * 2024-10-24-clinical_deidentification_docwise_wip_de (#1571) * Update 2024-10-22-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * Update 2024-10-24-clinical_deidentification_docwise_wip_de.md * 2024-10-24-ner_deid_generic_docwise_de (#1573) * 2024-11-04-clinical_deidentification_docwise_wip_de (#1580) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * added new large model * renamed MedMX * 2024-11-04-clinical_deidentification_docwise_wip_de (#1582) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-04-clinical_deidentification_docwise_wip_de (#1581) * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md * Add model 2024-11-04-clinical_deidentification_docwise_wip_de * Update 2024-11-04-clinical_deidentification_docwise_wip_de.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-06-clinical_deidentification_v2_wip_en (#1587) * 2024-11-06-clinical_deidentification_v2_wip_en (#1586) * 2024-11-06-clinical_deidentification_v2_wip_en (#1585) * Add model 2024-11-10-contextual_assertion_family_en (#1590) Co-authored-by: yigitgull <[email protected]> * 2024-11-12-drug_action_treatment_mapper_en (#1591) * 2024-11-19-medembed_base_rxnorm_augmented_en (#1610) * Add model 2024-11-19-medembed_base_rxnorm_augmented_en * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Update 2024-11-19-medembed_base_rxnorm_augmented_en.md * Add model 2024-11-19-medmebed_large_rxnorm_augmented_en * Update 2024-11-19-medmebed_large_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en (#1622) * Add model 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C. <[email protected]> * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md * Add model 2024-11-27-clinical_deidentification_docwise_wip_v2_en (#1626) * 2024-11-28-ner_deid_generic_docwise_de (#1627) * 2024-11-28-snomed_term_resolver_pipeline_en (#1628) * 2024-11-28-date_matcher_en (#1629) * Add model 2024-11-28-date_matcher_en * Update 2024-11-28-date_matcher_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-27-zeroshot_ner_clinical_large_en (#1625) * Add model 2024-11-27-zeroshot_ner_clinical_large_en * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Add model 2024-11-27-zeroshot_ner_clinical_medium_en * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Add model 2024-11-27-zeroshot_ner_oncology_medium_en * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en * Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_oncology_large_en * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-11-28-zeroshot_ner_oncology_large_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md * Update 2024-11-27-zeroshot_ner_oncology_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_medium_en.md * Update 2024-11-27-zeroshot_ner_clinical_large_en.md * 2024-11-28-zeroshot_ner_generic_medium_en (#1630) * Add model 2024-11-28-zeroshot_ner_generic_medium_en * Add model 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-28-zeroshot_ner_generic_large_en * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1631) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_en (#1632) * Add model 2024-11-29-clinical_deidentification_docwise_wip_en * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_v2_wip_en * Update 2024-11-29-clinical_deidentification_v2_wip_en.md * Update 2024-11-29-clinical_deidentification_docwise_wip_en.md * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Update 2024-11-29-clinical_deidentification_docwise_wip_de.md * Update 2024-11-29-clinical_deidentification_docwise_large_wip_de.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1634) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1633) * Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en * Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-11-29-clinical_deidentification_docwise_wip_de (#1635) * Add model 2024-11-29-clinical_deidentification_docwise_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de --------- Co-authored-by: Meryem1425 <[email protected]> * 2024-11-29-clinical_deidentification_docwise_large_wip_de (#1636) * Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de * Add model 2024-11-29-clinical_deidentification_docwise_wip_de --------- Co-authored-by: akrztrk <[email protected]> * 2024-11-29-zeroshot_ner_vop_medium_en (#1637) * Add model 2024-11-29-zeroshot_ner_vop_medium_en * Update 2024-11-29-zeroshot_ner_vop_medium_en.md * Add model 2024-11-30-zeroshot_ner_vop_large_en * Update 2024-11-30-zeroshot_ner_vop_large_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-02-sbiobertresolve_umls_major_concepts_en (#1643) * 2024-12-02-zeroshot_ner_ade_clinical_large_en (#1641) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1646) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1647) * 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1649) * 2024-12-04-ner_genes_phenotypes_wip_en (#1653) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1656) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1655) * 2024-12-04-clinical_deidentification_zeroshot_large_en (#1654) * 2024-12-05-sbiobertresolve_umls_drug_substance_en (#1657) * 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en (#1667) * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * Add model 2024-12-13-zeroshot_ner_oncology_biomarker_large_en * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-12-06-biolordresolve_umls_general_concepts_en (#1660) * Add model 2024-12-06-biolordresolve_umls_general_concepts_en * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Add model 2024-12-06-umls_clinical_drugs_mapper_en * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Add model 2024-12-09-umls_icd10cm_mapper_en * Update 2024-12-09-umls_icd10cm_mapper_en.md * Add model 2024-12-10-icd10cm_umls_mapper_en * Update 2024-12-10-icd10cm_umls_mapper_en.md * Add model 2024-12-10-umls_cpt_mapper_en * update scala code * update scala code * update scala code * update scala code * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-06-biolordresolve_umls_general_concepts_en.md * Update 2024-12-06-umls_clinical_drugs_mapper_en.md * Update 2024-12-09-umls_icd10cm_mapper_en.md * Update 2024-12-10-icd10cm_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-10-cpt_umls_mapper_en * Update 2024-12-10-cpt_umls_mapper_en.md * Add model 2024-12-11-umls_rxnorm_mapper_en * Update 2024-12-11-umls_rxnorm_mapper_en.md * Add model 2024-12-11-rxnorm_umls_mapper_en * Update 2024-12-11-rxnorm_umls_mapper_en.md * Add model 2024-12-11-umls_snomed_mapper_en * Update 2024-12-11-umls_snomed_mapper_en.md * Update 2024-12-11-umls_snomed_mapper_en.md * Add model 2024-12-11-snomed_umls_mapper_en * Update 2024-12-11-snomed_umls_mapper_en.md * Update 2024-12-10-umls_cpt_mapper_en.md * Add model 2024-12-11-umls_loinc_mapper_en * Update 2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-11-loinc_umls_mapper_en * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-umls_mesh_mapper_en * Update 2024-12-12-umls_mesh_mapper_en.md * Update 2024-12-11-loinc_umls_mapper_en.md * Add model 2024-12-12-mesh_umls_mapper_en * Update 2024-12-12-mesh_umls_mapper_en.md * Add model 2024-12-16-umls_disease_syndrome_mapper_en * Update 2024-12-16-umls_disease_syndrome_mapper_en.md * Add model 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en * Add model 2024-12-18-umls_drug_substance_mapper_en * Update 2024-12-18-umls_drug_substance_mapper_en.md * Add model 2024-12-18-umls_clinical_findings_mapper_en * Update 2024-12-18-umls_clinical_findings_mapper_en.md * Add model 2024-12-18-umls_major_concepts_mapper_en * Update 2024-12-18-umls_major_concepts_mapper_en.md * Update 2024-12-12-umls_mesh_mapper_en.md * Add model 2024-12-19-umls_loinc_mapper_en * Update 2024-12-19-umls_loinc_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-umls_loinc_mapper_en.md * Add model 2024-12-19-loinc_umls_mapper_en * Update 2024-12-19-loinc_umls_mapper_en.md * Delete docs/_posts/akrztrk/2024-12-11-loinc_umls_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md * Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md * 2024-12-19-medication_resolver_transform_pipeline_en (#1671) * 2024-12-19-medication_resolver_transform_pipeline_en (#1672) * 2024-12-19-medication_resolver_transform_pipeline_en (#1673) * 2025-01-01-zeroshot_ner_jsl_medium_en (#1680) * Add model 2025-01-01-zeroshot_ner_jsl_medium_en * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md * Add model 2025-01-01-zeroshot_ner_jsl_large_en * Update 2025-01-01-zeroshot_ner_jsl_large_en.md * Update 2025-01-01-zeroshot_ner_jsl_medium_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1681) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1682) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-03-clinical_deidentification_multi_mode_output_en (#1683) * Add model 2025-01-03-clinical_deidentification_multi_mode_output_en * Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md * Add model 2025-01-06-clinical_deidentification_light_en * Update 2025-01-06-clinical_deidentification_light_en.md * Add model 2025-01-06-zeroshot_ner_sdoh_medium_en * Update 2025-01-06-zeroshot_ner_sdoh_medium_en.md * Add model 2025-01-07-zeroshot_ner_sdoh_large_en * Update 2025-01-07-zeroshot_ner_sdoh_large_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> * 2025-01-11-ner_genes_phenotypes_en (#1684) * Add model 2025-01-11-ner_genes_phenotypes_en * Update 2025-01-11-ner_genes_phenotypes_en.md * Update 2025-01-11-ner_genes_phenotypes_en.md --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2025-01-13-ner_cancer_types_en (#1686) * 2025-01-14-sbiobertresolve_HPO_en (#1687) * Add model 2025-01-14-sbiobertresolve_HPO_en * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Update 2025-01-14-sbiobertresolve_HPO_en.md * Add model 2025-01-15-ner_oncology_biomarker_docwise_en * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md * Update 2025-01-15-ner_oncology_biomarker_docwise_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]>
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