2024-03-07-icd10cm_rxnorm_resolver_pipeline_en #1013

jsl-models · 2024-03-07T22:28:33Z

No description provided.

Fixed python code block view

docs/_posts/ahmet-mesut/2024-03-07-icd10cm_rxnorm_resolver_pipeline_en.md

@muhammetsnts

applied the changes noted by @muhammetsnts

* 2023-12-21-bert_sequence_classifier_clinical_sections_en (#834) * added missing files * 2024-01-08-ner_oncology_pipeline_en (#854) * Add model 2024-01-08-ner_oncology_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-oncology_diagnosis_pipeline_en * Add model 2024-01-09-ner_posology_combined_langtest_en * Delete docs/_posts/Meryem1425/2024-01-09-ner_posology_combined_langtest_en.md * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-08-ner_oncology_pipeline_en.md * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-10-medical_qa_biogpt_pipeline_en * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-flan_t5_base_jsl_qa_pipeline_en * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-ner_vop_pipeline_en * Add model 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Add model 2024-01-10-clinical_deidentification_en * Update 2024-01-10-clinical_deidentification_en.md * Update 2024-01-10-clinical_deidentification_en.md * Add model 2024-01-10-clinical_deidentification_langtest_en * Update 2024-01-10-clinical_deidentification_langtest_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-08-ner_oncology_pipeline_en (#855) * Add model 2024-01-08-ner_oncology_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-oncology_diagnosis_pipeline_en * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-08-ner_oncology_pipeline_en.md * Delete docs/_posts/gokhanturer/2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-10-ner_vop_pipeline_en --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-08-ner_oncology_pipeline_en (#856) * Add model 2024-01-08-ner_oncology_pipeline_en * Add model 2024-01-09-oncology_diagnosis_pipeline_en * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-08-ner_oncology_pipeline_en.md * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-09-medical_qa_biogpt_pipeline_en * Update 2024-01-09-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-flan_t5_base_jsl_qa_pipeline_en * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-ner_vop_pipeline_en * Add model 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-09-medical_qa_biogpt_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Add model 2024-01-10-clinical_deidentification_en * Update 2024-01-10-clinical_deidentification_en.md * Add model 2024-01-10-clinical_deidentification_langtest_en * Update 2024-01-10-clinical_deidentification_langtest_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en (#857) * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-10-medical_qa_biogpt_pipeline_en * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-flan_t5_base_jsl_qa_pipeline_en * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Add model 2024-01-10-clinical_deidentification_en * Update 2024-01-10-clinical_deidentification_en.md * Update 2024-01-10-clinical_deidentification_en.md * Add model 2024-01-10-clinical_deidentification_langtest_en * Update 2024-01-10-clinical_deidentification_langtest_en.md * Update 2024-01-10-clinical_deidentification_langtest_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * Add model 2024-01-11-ner_opioid_small_wip_en (#862) * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * 2024-01-15-drug_parser_en (#866) * Add model 2024-01-15-drug_parser_en * Update 2024-01-15-drug_parser_en.md * Update 2024-01-15-drug_parser_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-16-explain_clinical_doc_vop_en (#875) * Add model 2024-01-16-explain_clinical_doc_vop_en * Update 2024-01-16-explain_clinical_doc_vop_en.md spark version 3.4.0 * Add model 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Add model 2024-01-17-sbiobertresolve_atc_pipeline_en * Revert "Add model 2024-01-17-sbiobertresolve_atc_pipeline_en" This reverts commit 6481c94. * Delete docs/_posts/akrztrk/2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-01-16-explain_clinical_doc_vop_en (#874) * Add model 2024-01-16-explain_clinical_doc_vop_en * Update 2024-01-16-explain_clinical_doc_vop_en.md spark version 3.2.1 * Add model 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Add model 2024-01-17-sbiobertresolve_atc_pipeline_en * Delete docs/_posts/ahmet-mesut/2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Delete docs/_posts/ahmet-mesut/2024-01-17-sbiobertresolve_atc_pipeline_en.md * Add model 2024-01-17-hcc_resolver_pipeline_en * Add model 2024-01-17-atc_resolver_pipeline_en * Update 2024-01-16-explain_clinical_doc_vop_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-01-16-explain_clinical_doc_vop_en.md * 2024-01-17-sbiobertresolve_rxnorm_augmented_en (#878) * Add model 2024-01-17-sbiobertresolve_rxnorm_augmented_en * Update 2024-01-17-sbiobertresolve_rxnorm_augmented_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-16-explain_clinical_doc_oncology_en (#873) * Add model 2024-01-16-explain_clinical_doc_oncology_en * Update 2024-01-16-explain_clinical_doc_oncology_en.md * Add model 2024-01-16-explain_clinical_doc_generic_en * Update 2024-01-16-explain_clinical_doc_generic_en.md * Add model 2024-01-16-explain_clinical_doc_vop_en * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md explain_clinical_doc_vop - spark version: 3.0 * Update 2024-01-16-explain_clinical_doc_vop_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md Separate table for NERs added. * Update 2024-01-16-explain_clinical_doc_vop_en.md changed the sample results * Add model 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Add model 2024-01-16-sbiobertresolve_snomed_findings_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_findings_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md modification in description * Update 2024-01-16-explain_clinical_doc_oncology_en.md * Add model 2024-01-17-sbiobertresolve_atc_pipeline_en * Add model 2024-01-17-sbiobertresolve_hcc_augmented_pipeline_en * Delete docs/_posts/bunyamin-polat/2024-01-17-sbiobertresolve_atc_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-17-sbiobertresolve_hcc_augmented_pipeline_en.md * Add model 2024-01-17-hcc_resolver_pipeline_en * Add model 2024-01-17-atc_resolver_pipeline_en * Update 2024-01-16-explain_clinical_doc_vop_en.md made changes in the description. * Add model 2024-01-17-snomed_body_structure_resolver_pipeline_en * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-16-sbiobertresolve_snomed_findings_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-snomed_findings_resolver_pipeline_en * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_oncology_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Samed K <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-17-hcc_resolver_pipeline_en (#876) * Add model 2024-01-17-hcc_resolver_pipeline_en * Add model 2024-01-17-atc_resolver_pipeline_en * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Add model 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-snomed_body_structure_resolver_pipeline_en * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Add model 2024-01-17-snomed_findings_resolver_pipeline_en * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en (#879) * Add model 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-snomed_body_structure_resolver_pipeline_en (#877) * Add model 2024-01-17-snomed_body_structure_resolver_pipeline_en * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Add model 2024-01-17-snomed_findings_resolver_pipeline_en * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Add model 2024-01-17-explain_clinical_doc_generic_en * Update 2024-01-17-explain_clinical_doc_generic_en.md * Update 2024-01-17-explain_clinical_doc_generic_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Samed K <[email protected]> * 2024-01-17-explain_clinical_doc_generic_en (#880) * Add model 2024-01-17-explain_clinical_doc_generic_en * Update 2024-01-17-explain_clinical_doc_generic_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Samed K <[email protected]> * 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en (#881) * Add model 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en (#882) * Add model 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-hpo_resolver_pipeline_en (#883) * Add model 2024-01-17-hpo_resolver_pipeline_en * Add model 2024-01-17-ner_deid_name_multilingual_xx * Update 2024-01-17-ner_deid_name_multilingual_xx.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * removed drug_parser * 2024-01-17-explain_clinical_doc_radiology_en (#885) * Add model 2024-01-17-explain_clinical_doc_radiology_en * Update 2024-01-17-explain_clinical_doc_radiology_en.md * Update 2024-01-17-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-18-hpo_resolver_pipeline_en (#887) * Add model 2024-01-18-hpo_resolver_pipeline_en * Update 2024-01-18-hpo_resolver_pipeline_en.md * Add model 2024-01-18-explain_clinical_doc_radiology_en * Update 2024-01-18-explain_clinical_doc_radiology_en.md * Add model 2024-01-18-explain_clinical_doc_oncology_en * Update 2024-01-18-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-18-hpo_resolver_pipeline_en (#886) * Add model 2024-01-18-hpo_resolver_pipeline_en * Update 2024-01-18-hpo_resolver_pipeline_en.md * Add model 2024-01-18-explain_clinical_doc_radiology_en * Update 2024-01-18-explain_clinical_doc_radiology_en.md * Add model 2024-01-18-explain_clinical_doc_oncology_en * Update 2024-01-18-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * Add model 2024-01-22-sbiobert_base_cased_mli_onnx_en (#899) * 2024-01-24-sbiobertresolve_snomed_findings_en (#905) * Add model 2024-01-24-sbiobertresolve_snomed_findings_en * Update 2024-01-24-sbiobertresolve_snomed_findings_en.md made the necessary changes - spark nlp 5.2.1 --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> * 2024-01-25-mesh_resolver_pipeline_en (#908) * Add model 2024-01-25-mesh_resolver_pipeline_en * Update 2024-01-25-mesh_resolver_pipeline_en.md * Add model 2024-01-25-ndc_resolver_pipeline_en * Update 2024-01-25-ndc_resolver_pipeline_en.md * Add model 2024-01-25-ner_clinical_abbreviation_langtest_en * Update 2024-01-25-ner_clinical_abbreviation_langtest_en.md * Update 2024-01-25-ner_clinical_abbreviation_langtest_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-25-mesh_resolver_pipeline_en (#909) * Add model 2024-01-25-mesh_resolver_pipeline_en * Update 2024-01-25-mesh_resolver_pipeline_en.md * Update 2024-01-25-mesh_resolver_pipeline_en.md * Add model 2024-01-25-ndc_resolver_pipeline_en * Update 2024-01-25-ndc_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-25-mesh_resolver_pipeline_en (#910) * Add model 2024-01-25-mesh_resolver_pipeline_en * Update 2024-01-25-mesh_resolver_pipeline_en.md * Add model 2024-01-25-ndc_resolver_pipeline_en * Update 2024-01-25-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-26-explain_clinical_doc_granular_en (#911) * Add model 2024-01-26-explain_clinical_doc_granular_en * Update 2024-01-26-explain_clinical_doc_granular_en.md * Update 2024-01-26-explain_clinical_doc_granular_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-26-explain_clinical_doc_granular_en (#914) * Add model 2024-01-26-explain_clinical_doc_granular_en * Update 2024-01-26-explain_clinical_doc_granular_en.md * Add model 2024-01-26-sbiobertresolve_snomed_findings_en --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-26-explain_clinical_doc_granular_en (#913) * Add model 2024-01-26-explain_clinical_doc_granular_en * Update 2024-01-26-explain_clinical_doc_granular_en.md * Add model 2024-01-28-hcpcs_resolver_pipeline_en * Update 2024-01-28-hcpcs_resolver_pipeline_en.md * Update 2024-01-28-hcpcs_resolver_pipeline_en.md * Add model 2024-01-28-hgnc_resolver_pipeline_en * Update 2024-01-28-hgnc_resolver_pipeline_en.md * Add model 2024-01-28-icd10cm_generalised_augmented_resolver_pipeline_en * Update 2024-01-28-icd10cm_generalised_augmented_resolver_pipeline_en.md * Add model 2024-01-28-loinc_numeric_resolver_pipeline_en * Update 2024-01-28-loinc_numeric_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-hcpcs_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-icd10cm_generalised_augmented_resolver_pipeline_en.md * Add model 2024-01-29-hcpcs_resolver_pipeline_en * Update 2024-01-29-hcpcs_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-loinc_numeric_resolver_pipeline_en.md * Add model 2024-01-29-loinc_numeric_resolver_pipeline_en * Update 2024-01-29-loinc_numeric_resolver_pipeline_en.md * Update 2024-01-29-loinc_numeric_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-29-hcpcs_resolver_pipeline_en.md Rename TREATMENT with PROCEDURE and reload. * Add model 2024-01-29-explain_clinical_doc_oncology_en * Update 2024-01-29-explain_clinical_doc_oncology_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-hgnc_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-29-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-30-loinc_numeric_resolver_pipeline_en (#919) * Add model 2024-01-30-loinc_numeric_resolver_pipeline_en * Update 2024-01-30-loinc_numeric_resolver_pipeline_en.md * Add model 2024-01-30-icd10cm_generalised_resolver_pipeline_en * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Add model 2024-01-30-hgnc_resolver_pipeline_en * Update 2024-01-30-hgnc_resolver_pipeline_en.md * Add model 2024-01-30-hcpcs_resolver_pipeline_en * Update 2024-01-30-hcpcs_resolver_pipeline_en.md * Update 2024-01-30-hgnc_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-30-loinc_numeric_resolver_pipeline_en (#921) * Add model 2024-01-30-loinc_numeric_resolver_pipeline_en * Add model 2024-01-30-hgnc_resolver_pipeline_en * Update 2024-01-30-loinc_numeric_resolver_pipeline_en.md * Update 2024-01-30-hgnc_resolver_pipeline_en.md * Add model 2024-01-30-icd10cm_generalised_resolver_pipeline_en * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Add model 2024-01-30-hcpcs_resolver_pipeline_en * Update 2024-01-30-hcpcs_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-30-loinc_numeric_resolver_pipeline_en (#922) * Add model 2024-01-30-loinc_numeric_resolver_pipeline_en * Update 2024-01-30-loinc_numeric_resolver_pipeline_en.md * Add model 2024-01-30-icd10cm_generalised_resolver_pipeline_en * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Add model 2024-01-30-hgnc_resolver_pipeline_en * Update 2024-01-30-hgnc_resolver_pipeline_en.md * Add model 2024-01-30-hcpcs_resolver_pipeline_en * Update 2024-01-30-hcpcs_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en (#923) * Add model 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en * Update 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en.md * Update 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#926) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-31-sbiobertresolve_snomed_conditions_en (#925) * Add model 2024-01-31-sbiobertresolve_snomed_conditions_en * Update 2024-01-31-sbiobertresolve_snomed_conditions_en.md * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#927) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-01-ncit_resolver_pipeline_en (#932) * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-01-rxcui_resolver_pipeline_en (#933) * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * 2024-02-02-icdo_resolver_pipeline_en (#934) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#935) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#936) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-05-explain_clinical_doc_radiology_en (#940) * Add model 2024-02-05-explain_clinical_doc_radiology_en * Update 2024-02-05-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * 2024-02-05-sbiobertresolve_snomed_drug_en (#941) * Add model 2024-02-05-sbiobertresolve_snomed_drug_en * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Add model 2024-02-05-sbiobertresolve_snomed_bodyStructure_en * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-06-sbiobertresolve_snomed_findings_en (#946) * Add model 2024-02-06-sbiobertresolve_snomed_findings_en * Update 2024-02-06-sbiobertresolve_snomed_findings_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted snomed model cards * 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en (#948) * Add model 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-08-clinical_deidentification_obfuscation_medium_en (#949) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#950) * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#951) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#952) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#953) * Add model 2024-02-09-clinical_deidentification_obfuscation_small_en * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#954) * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted small and medıum deıd pipeline * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * 2024-02-12-ner_deid_name_multilingual_clinical_xx (#956) * 2024-02-13-ner_snomed_term_en (#957) * 2024-02-13-bert_sequence_classifier_biomarker_en (#958) * 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en (#961) * Add model 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-14-sbiobertresolve_snomed_auxConcepts_en (#962) * 2024-02-15-umls_loinc_mapper_en (#966) * Add model 2024-02-15-umls_loinc_mapper_en * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Samed K <[email protected]> Co-authored-by: gpirge <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]>

* 2023-12-21-bert_sequence_classifier_clinical_sections_en (#834) * added missing files * 2024-01-08-ner_oncology_pipeline_en (#854) * Add model 2024-01-08-ner_oncology_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-oncology_diagnosis_pipeline_en * Add model 2024-01-09-ner_posology_combined_langtest_en * Delete docs/_posts/Meryem1425/2024-01-09-ner_posology_combined_langtest_en.md * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-08-ner_oncology_pipeline_en.md * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-10-medical_qa_biogpt_pipeline_en * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-flan_t5_base_jsl_qa_pipeline_en * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-ner_vop_pipeline_en * Add model 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Add model 2024-01-10-clinical_deidentification_en * Update 2024-01-10-clinical_deidentification_en.md * Update 2024-01-10-clinical_deidentification_en.md * Add model 2024-01-10-clinical_deidentification_langtest_en * Update 2024-01-10-clinical_deidentification_langtest_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-08-ner_oncology_pipeline_en (#855) * Add model 2024-01-08-ner_oncology_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Add model 2024-01-09-oncology_diagnosis_pipeline_en * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-08-ner_oncology_pipeline_en.md * Delete docs/_posts/gokhanturer/2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-10-ner_vop_pipeline_en --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-08-ner_oncology_pipeline_en (#856) * Add model 2024-01-08-ner_oncology_pipeline_en * Add model 2024-01-09-oncology_diagnosis_pipeline_en * Update 2024-01-09-oncology_diagnosis_pipeline_en.md * Update 2024-01-08-ner_oncology_pipeline_en.md * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-09-medical_qa_biogpt_pipeline_en * Update 2024-01-09-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-flan_t5_base_jsl_qa_pipeline_en * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-ner_vop_pipeline_en * Add model 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-09-medical_qa_biogpt_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Add model 2024-01-10-clinical_deidentification_en * Update 2024-01-10-clinical_deidentification_en.md * Add model 2024-01-10-clinical_deidentification_langtest_en * Update 2024-01-10-clinical_deidentification_langtest_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en (#857) * Add model 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Add model 2024-01-10-medical_qa_biogpt_pipeline_en * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-flan_t5_base_jsl_qa_pipeline_en * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_base_onnx_pipeline_en.md * Update 2024-01-09-summarizer_clinical_laymen_onnx_pipeline_en.md * Update 2024-01-10-flan_t5_base_jsl_qa_pipeline_en.md * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * Add model 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Update 2024-01-10-clinical_notes_qa_large_onnx_pipeline_en.md * Add model 2024-01-10-clinical_deidentification_en * Update 2024-01-10-clinical_deidentification_en.md * Update 2024-01-10-clinical_deidentification_en.md * Add model 2024-01-10-clinical_deidentification_langtest_en * Update 2024-01-10-clinical_deidentification_langtest_en.md * Update 2024-01-10-clinical_deidentification_langtest_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * Add model 2024-01-11-ner_opioid_small_wip_en (#862) * Update 2024-01-10-medical_qa_biogpt_pipeline_en.md * 2024-01-15-drug_parser_en (#866) * Add model 2024-01-15-drug_parser_en * Update 2024-01-15-drug_parser_en.md * Update 2024-01-15-drug_parser_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-16-explain_clinical_doc_vop_en (#875) * Add model 2024-01-16-explain_clinical_doc_vop_en * Update 2024-01-16-explain_clinical_doc_vop_en.md spark version 3.4.0 * Add model 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Add model 2024-01-17-sbiobertresolve_atc_pipeline_en * Revert "Add model 2024-01-17-sbiobertresolve_atc_pipeline_en" This reverts commit 6481c94e43093bf5ef502bbebbf26a7edf28ce38. * Delete docs/_posts/akrztrk/2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-01-16-explain_clinical_doc_vop_en (#874) * Add model 2024-01-16-explain_clinical_doc_vop_en * Update 2024-01-16-explain_clinical_doc_vop_en.md spark version 3.2.1 * Add model 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Add model 2024-01-17-sbiobertresolve_atc_pipeline_en * Delete docs/_posts/ahmet-mesut/2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Delete docs/_posts/ahmet-mesut/2024-01-17-sbiobertresolve_atc_pipeline_en.md * Add model 2024-01-17-hcc_resolver_pipeline_en * Add model 2024-01-17-atc_resolver_pipeline_en * Update 2024-01-16-explain_clinical_doc_vop_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-01-16-explain_clinical_doc_vop_en.md * 2024-01-17-sbiobertresolve_rxnorm_augmented_en (#878) * Add model 2024-01-17-sbiobertresolve_rxnorm_augmented_en * Update 2024-01-17-sbiobertresolve_rxnorm_augmented_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-16-explain_clinical_doc_oncology_en (#873) * Add model 2024-01-16-explain_clinical_doc_oncology_en * Update 2024-01-16-explain_clinical_doc_oncology_en.md * Add model 2024-01-16-explain_clinical_doc_generic_en * Update 2024-01-16-explain_clinical_doc_generic_en.md * Add model 2024-01-16-explain_clinical_doc_vop_en * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md explain_clinical_doc_vop - spark version: 3.0 * Update 2024-01-16-explain_clinical_doc_vop_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md Separate table for NERs added. * Update 2024-01-16-explain_clinical_doc_vop_en.md changed the sample results * Add model 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Add model 2024-01-16-sbiobertresolve_snomed_findings_pipeline_en * Update 2024-01-16-sbiobertresolve_snomed_findings_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_vop_en.md modification in description * Update 2024-01-16-explain_clinical_doc_oncology_en.md * Add model 2024-01-17-sbiobertresolve_atc_pipeline_en * Add model 2024-01-17-sbiobertresolve_hcc_augmented_pipeline_en * Delete docs/_posts/bunyamin-polat/2024-01-17-sbiobertresolve_atc_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-17-sbiobertresolve_hcc_augmented_pipeline_en.md * Add model 2024-01-17-hcc_resolver_pipeline_en * Add model 2024-01-17-atc_resolver_pipeline_en * Update 2024-01-16-explain_clinical_doc_vop_en.md made changes in the description. * Add model 2024-01-17-snomed_body_structure_resolver_pipeline_en * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-16-sbiobertresolve_snomed_bodyStructure_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-16-sbiobertresolve_snomed_findings_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-snomed_findings_resolver_pipeline_en * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_oncology_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-16-explain_clinical_doc_generic_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Samed K <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-17-hcc_resolver_pipeline_en (#876) * Add model 2024-01-17-hcc_resolver_pipeline_en * Add model 2024-01-17-atc_resolver_pipeline_en * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Add model 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Add model 2024-01-17-snomed_body_structure_resolver_pipeline_en * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Add model 2024-01-17-snomed_findings_resolver_pipeline_en * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-atc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-17-hcc_resolver_pipeline_en.md * Update 2024-01-17-cpt_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en (#879) * Add model 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-snomed_body_structure_resolver_pipeline_en (#877) * Add model 2024-01-17-snomed_body_structure_resolver_pipeline_en * Update 2024-01-17-snomed_body_structure_resolver_pipeline_en.md * Add model 2024-01-17-snomed_findings_resolver_pipeline_en * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Update 2024-01-17-snomed_findings_resolver_pipeline_en.md * Add model 2024-01-17-explain_clinical_doc_generic_en * Update 2024-01-17-explain_clinical_doc_generic_en.md * Update 2024-01-17-explain_clinical_doc_generic_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Samed K <[email protected]> * 2024-01-17-explain_clinical_doc_generic_en (#880) * Add model 2024-01-17-explain_clinical_doc_generic_en * Update 2024-01-17-explain_clinical_doc_generic_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Samed K <[email protected]> * 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en (#881) * Add model 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en (#882) * Add model 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-17-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-17-hpo_resolver_pipeline_en (#883) * Add model 2024-01-17-hpo_resolver_pipeline_en * Add model 2024-01-17-ner_deid_name_multilingual_xx * Update 2024-01-17-ner_deid_name_multilingual_xx.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * removed drug_parser * 2024-01-17-explain_clinical_doc_radiology_en (#885) * Add model 2024-01-17-explain_clinical_doc_radiology_en * Update 2024-01-17-explain_clinical_doc_radiology_en.md * Update 2024-01-17-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-18-hpo_resolver_pipeline_en (#887) * Add model 2024-01-18-hpo_resolver_pipeline_en * Update 2024-01-18-hpo_resolver_pipeline_en.md * Add model 2024-01-18-explain_clinical_doc_radiology_en * Update 2024-01-18-explain_clinical_doc_radiology_en.md * Add model 2024-01-18-explain_clinical_doc_oncology_en * Update 2024-01-18-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-18-hpo_resolver_pipeline_en (#886) * Add model 2024-01-18-hpo_resolver_pipeline_en * Update 2024-01-18-hpo_resolver_pipeline_en.md * Add model 2024-01-18-explain_clinical_doc_radiology_en * Update 2024-01-18-explain_clinical_doc_radiology_en.md * Add model 2024-01-18-explain_clinical_doc_oncology_en * Update 2024-01-18-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * Add model 2024-01-22-sbiobert_base_cased_mli_onnx_en (#899) * 2024-01-24-sbiobertresolve_snomed_findings_en (#905) * Add model 2024-01-24-sbiobertresolve_snomed_findings_en * Update 2024-01-24-sbiobertresolve_snomed_findings_en.md made the necessary changes - spark nlp 5.2.1 --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> * 2024-01-25-mesh_resolver_pipeline_en (#908) * Add model 2024-01-25-mesh_resolver_pipeline_en * Update 2024-01-25-mesh_resolver_pipeline_en.md * Add model 2024-01-25-ndc_resolver_pipeline_en * Update 2024-01-25-ndc_resolver_pipeline_en.md * Add model 2024-01-25-ner_clinical_abbreviation_langtest_en * Update 2024-01-25-ner_clinical_abbreviation_langtest_en.md * Update 2024-01-25-ner_clinical_abbreviation_langtest_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-25-mesh_resolver_pipeline_en (#909) * Add model 2024-01-25-mesh_resolver_pipeline_en * Update 2024-01-25-mesh_resolver_pipeline_en.md * Update 2024-01-25-mesh_resolver_pipeline_en.md * Add model 2024-01-25-ndc_resolver_pipeline_en * Update 2024-01-25-ndc_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-25-mesh_resolver_pipeline_en (#910) * Add model 2024-01-25-mesh_resolver_pipeline_en * Update 2024-01-25-mesh_resolver_pipeline_en.md * Add model 2024-01-25-ndc_resolver_pipeline_en * Update 2024-01-25-ndc_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-26-explain_clinical_doc_granular_en (#911) * Add model 2024-01-26-explain_clinical_doc_granular_en * Update 2024-01-26-explain_clinical_doc_granular_en.md * Update 2024-01-26-explain_clinical_doc_granular_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-26-explain_clinical_doc_granular_en (#914) * Add model 2024-01-26-explain_clinical_doc_granular_en * Update 2024-01-26-explain_clinical_doc_granular_en.md * Add model 2024-01-26-sbiobertresolve_snomed_findings_en --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-26-explain_clinical_doc_granular_en (#913) * Add model 2024-01-26-explain_clinical_doc_granular_en * Update 2024-01-26-explain_clinical_doc_granular_en.md * Add model 2024-01-28-hcpcs_resolver_pipeline_en * Update 2024-01-28-hcpcs_resolver_pipeline_en.md * Update 2024-01-28-hcpcs_resolver_pipeline_en.md * Add model 2024-01-28-hgnc_resolver_pipeline_en * Update 2024-01-28-hgnc_resolver_pipeline_en.md * Add model 2024-01-28-icd10cm_generalised_augmented_resolver_pipeline_en * Update 2024-01-28-icd10cm_generalised_augmented_resolver_pipeline_en.md * Add model 2024-01-28-loinc_numeric_resolver_pipeline_en * Update 2024-01-28-loinc_numeric_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-hcpcs_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-icd10cm_generalised_augmented_resolver_pipeline_en.md * Add model 2024-01-29-hcpcs_resolver_pipeline_en * Update 2024-01-29-hcpcs_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-loinc_numeric_resolver_pipeline_en.md * Add model 2024-01-29-loinc_numeric_resolver_pipeline_en * Update 2024-01-29-loinc_numeric_resolver_pipeline_en.md * Update 2024-01-29-loinc_numeric_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-29-hcpcs_resolver_pipeline_en.md Rename TREATMENT with PROCEDURE and reload. * Add model 2024-01-29-explain_clinical_doc_oncology_en * Update 2024-01-29-explain_clinical_doc_oncology_en.md * Delete docs/_posts/bunyamin-polat/2024-01-28-hgnc_resolver_pipeline_en.md * Delete docs/_posts/bunyamin-polat/2024-01-29-loinc_numeric_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-30-loinc_numeric_resolver_pipeline_en (#919) * Add model 2024-01-30-loinc_numeric_resolver_pipeline_en * Update 2024-01-30-loinc_numeric_resolver_pipeline_en.md * Add model 2024-01-30-icd10cm_generalised_resolver_pipeline_en * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Add model 2024-01-30-hgnc_resolver_pipeline_en * Update 2024-01-30-hgnc_resolver_pipeline_en.md * Add model 2024-01-30-hcpcs_resolver_pipeline_en * Update 2024-01-30-hcpcs_resolver_pipeline_en.md * Update 2024-01-30-hgnc_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-30-loinc_numeric_resolver_pipeline_en (#921) * Add model 2024-01-30-loinc_numeric_resolver_pipeline_en * Add model 2024-01-30-hgnc_resolver_pipeline_en * Update 2024-01-30-loinc_numeric_resolver_pipeline_en.md * Update 2024-01-30-hgnc_resolver_pipeline_en.md * Add model 2024-01-30-icd10cm_generalised_resolver_pipeline_en * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Add model 2024-01-30-hcpcs_resolver_pipeline_en * Update 2024-01-30-hcpcs_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-30-loinc_numeric_resolver_pipeline_en (#922) * Add model 2024-01-30-loinc_numeric_resolver_pipeline_en * Update 2024-01-30-loinc_numeric_resolver_pipeline_en.md * Add model 2024-01-30-icd10cm_generalised_resolver_pipeline_en * Update 2024-01-30-icd10cm_generalised_resolver_pipeline_en.md * Add model 2024-01-30-hgnc_resolver_pipeline_en * Update 2024-01-30-hgnc_resolver_pipeline_en.md * Add model 2024-01-30-hcpcs_resolver_pipeline_en * Update 2024-01-30-hcpcs_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en (#923) * Add model 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en * Update 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en.md * Update 2024-01-30-sbiobertresolve_snomed_procedures_measurements_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#926) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-31-sbiobertresolve_snomed_conditions_en (#925) * Add model 2024-01-31-sbiobertresolve_snomed_conditions_en * Update 2024-01-31-sbiobertresolve_snomed_conditions_en.md * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#927) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-01-ncit_resolver_pipeline_en (#932) * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-01-rxcui_resolver_pipeline_en (#933) * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * 2024-02-02-icdo_resolver_pipeline_en (#934) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#935) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#936) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-05-explain_clinical_doc_radiology_en (#940) * Add model 2024-02-05-explain_clinical_doc_radiology_en * Update 2024-02-05-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * 2024-02-05-sbiobertresolve_snomed_drug_en (#941) * Add model 2024-02-05-sbiobertresolve_snomed_drug_en * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Add model 2024-02-05-sbiobertresolve_snomed_bodyStructure_en * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-06-sbiobertresolve_snomed_findings_en (#946) * Add model 2024-02-06-sbiobertresolve_snomed_findings_en * Update 2024-02-06-sbiobertresolve_snomed_findings_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted snomed model cards * 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en (#948) * Add model 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-08-clinical_deidentification_obfuscation_medium_en (#949) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#950) * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#951) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#952) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#953) * Add model 2024-02-09-clinical_deidentification_obfuscation_small_en * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#954) * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted small and medıum deıd pipeline * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * 2024-02-12-ner_deid_name_multilingual_clinical_xx (#956) * 2024-02-13-ner_snomed_term_en (#957) * 2024-02-13-bert_sequence_classifier_biomarker_en (#958) * 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en (#961) * Add model 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-14-sbiobertresolve_snomed_auxConcepts_en (#962) * 2024-02-15-umls_loinc_mapper_en (#966) * Add model 2024-02-15-umls_loinc_mapper_en * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_m…

* 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#926) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-01-31-sbiobertresolve_snomed_conditions_en (#925) * Add model 2024-01-31-sbiobertresolve_snomed_conditions_en * Update 2024-01-31-sbiobertresolve_snomed_conditions_en.md * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en (#927) * Add model 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-01-ncit_resolver_pipeline_en (#932) * Add model 2024-02-01-ncit_resolver_pipeline_en * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-01-rxcui_resolver_pipeline_en (#933) * Add model 2024-02-01-rxcui_resolver_pipeline_en * Update 2024-02-01-rxcui_resolver_pipeline_en.md * Add model 2024-02-01-ncit_resolver_pipeline_en * Update 2024-02-01-ncit_resolver_pipeline_en.md * Update 2024-02-01-rxcui_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * Update 2024-01-31-snomed_procedures_measurements_resolver_pipeline_en.md * 2024-02-02-icdo_resolver_pipeline_en (#934) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#935) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-02-icdo_resolver_pipeline_en (#936) * Add model 2024-02-02-icdo_resolver_pipeline_en * Add model 2024-02-02-loinc_resolver_pipeline_en * Update 2024-02-02-icdo_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Add model 2024-02-02-icd10pcs_resolver_pipeline_en * Update 2024-02-02-icd10pcs_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-05-explain_clinical_doc_radiology_en (#940) * Add model 2024-02-05-explain_clinical_doc_radiology_en * Update 2024-02-05-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * Update 2024-02-02-loinc_resolver_pipeline_en.md * 2024-02-05-sbiobertresolve_snomed_drug_en (#941) * Add model 2024-02-05-sbiobertresolve_snomed_drug_en * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Add model 2024-02-05-sbiobertresolve_snomed_bodyStructure_en * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_drug_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md * Update 2024-02-05-sbiobertresolve_snomed_bodyStructure_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-06-sbiobertresolve_snomed_findings_en (#946) * Add model 2024-02-06-sbiobertresolve_snomed_findings_en * Update 2024-02-06-sbiobertresolve_snomed_findings_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted snomed model cards * 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en (#948) * Add model 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md * Update 2024-02-08-sbiobertresolve_snomed_procedures_measurements_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-08-clinical_deidentification_obfuscation_medium_en (#949) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#950) * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#951) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#952) * 2024-02-09-clinical_deidentification_obfuscation_small_en (#953) * Add model 2024-02-09-clinical_deidentification_obfuscation_small_en * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-09-clinical_deidentification_obfuscation_medium_en (#954) * Add model 2024-02-09-clinical_deidentification_obfuscation_medium_en * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * deleted small and medıum deıd pipeline * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_small_en.md * Update 2024-02-09-clinical_deidentification_obfuscation_medium_en.md * 2024-02-12-ner_deid_name_multilingual_clinical_xx (#956) * 2024-02-13-ner_snomed_term_en (#957) * 2024-02-13-bert_sequence_classifier_biomarker_en (#958) * 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en (#961) * Add model 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-14-sbiobertresolve_snomed_auxConcepts_en (#962) * 2024-02-15-umls_loinc_mapper_en (#966) * Add model 2024-02-15-umls_loinc_mapper_en * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]>

* 2024-02-13-ner_snomed_term_en (#957) * 2024-02-13-bert_sequence_classifier_biomarker_en (#958) * 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en (#961) * Add model 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md * Update 2024-02-14-sbiobertresolve_snomed_findings_auxConcepts_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-14-sbiobertresolve_snomed_auxConcepts_en (#962) * 2024-02-15-umls_loinc_mapper_en (#966) * Add model 2024-02-15-umls_loinc_mapper_en * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]>

* 2024-02-17-rxnorm_action_mapper_en (#968) * Update 2024-02-15-umls_loinc_mapper_en.md * Update 2024-02-15-umls_loinc_mapper_en.md * 2024-02-19-loinc_umls_mapper_en (#969) * Add model 2024-02-19-loinc_umls_mapper_en * Update 2024-02-19-loinc_umls_mapper_en.md * Update 2024-02-19-loinc_umls_mapper_en.md * Add model 2024-02-19-icd10cm_generalised_mapper_en * Update 2024-02-19-icd10cm_generalised_mapper_en.md * Update 2024-02-19-icd10cm_generalised_mapper_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-21-clinical_deidentification_subentity_en (#977) * 2024-02-21-clinical_deidentification_subentity_en (#976) * 2024-02-21-clinical_deidentification_subentity_en (#975) * 2024-02-21-clinical_deidentification_en (#980) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#981) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-clinical_deidentification_en (#982) * Add model 2024-02-21-clinical_deidentification_en * Update 2024-02-21-clinical_deidentification_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> * 2024-02-21-drug_matcher_en (#979) * Add model 2024-02-21-drug_matcher_en * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md * Update 2024-02-21-drug_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-02-23-medication_resolver_transform_pipeline_en (#984) * Add model 2024-02-23-medication_resolver_transform_pipeline_en * Add model 2024-02-23-medication_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2024-02-26-umls_snomed_mapper_en (#990) * 2024-02-27-medication_resolver_transform_pipeline_en (#993) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-medication_resolver_transform_pipeline_en (#994) * Add model 2024-02-27-medication_resolver_transform_pipeline_en * Add model 2024-02-27-medication_resolver_pipeline_en * Update 2024-02-27-medication_resolver_pipeline_en.md * Update 2024-02-27-medication_resolver_transform_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-02-27-umls_cpt_mapper_en (#995) * 2024-02-28-ner_opioid_en (#997) * 2024-02-28-biomarker_matcher_en (#998) * Add model 2024-02-28-biomarker_matcher_en * Update 2024-02-28-biomarker_matcher_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-03-snomed_findings_resolver_pipeline_en (#1004) * Update 2024-03-03-snomed_findings_resolver_pipeline_en.md * 2024-03-05-snomed_body_structure_resolver_pipeline_en (#1009) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1003) * 2024-03-06-sbiobertresolve_snomed_findings_aux_concepts_en (#1010) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: bunyamin-polat <[email protected]> Co-authored-by: Bünyamin Polat <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]>

* 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1014) * 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en (#1013) * 2024-03-03-snomed_findings_resolver_pipeline_en (#1002) * 2024-03-11-explain_clinical_doc_biomarker_en (#1018) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-12-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-12-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1017) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-11-explain_clinical_doc_biomarker_en (#1016) * Add model 2024-03-11-explain_clinical_doc_biomarker_en * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_drug_resolver_pipeline_en * Update 2024-03-11-snomed_drug_resolver_pipeline_en.md * Add model 2024-03-11-snomed_conditions_resolver_pipeline_en * Update 2024-03-11-snomed_conditions_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_resolver_pipeline_en * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Add model 2024-03-11-snomed_auxConcepts_resolver_pipeline_en * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md * Update 2024-03-11-explain_clinical_doc_biomarker_en.md * Update 2024-03-11-snomed_resolver_pipeline_en.md * Update 2024-03-11-snomed_auxConcepts_resolver_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-12-ner_deid_name_multilingual_clinical_langtest_xx (#1020) * 2024-03-13-rxnorm_umls_mapper_en (#1022) * Add model 2024-03-13-rxnorm_umls_mapper_en * Add model 2024-03-13-umls_rxnorm_mapper_en * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-13-rxnorm_umls_mapper_en.md * Update 2024-03-13-umls_rxnorm_mapper_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1029) Co-authored-by: akrztrk <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1027) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_generic_optimized_en (#1026) * Add model 2024-03-14-clinical_deidentification_generic_optimized_en * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md * Update 2024-03-14-clinical_deidentification_generic_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2024-03-14-clinical_deidentification_subentity_nameAugmented_en (#1028) Co-authored-by: Cabir40 <[email protected]> * Add model 2024-03-13-clinical_deidentification_subentity_nameAugmented_en (#1024) Co-authored-by: RakshitKhajuria <[email protected]> * updated md * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1030) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1031) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-clinical_deidentification_subentity_optimized_en (#1032) * Add model 2024-03-14-clinical_deidentification_subentity_optimized_en * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md * Update 2024-03-14-clinical_deidentification_subentity_optimized_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-14-icd10_meddra_llt_mapper_en (#1034) * Add model 2024-03-14-icd10_meddra_llt_mapper_en * Add model 2024-03-14-meddra_llt_icd10_mapper_en * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-15-icd10_meddra_pt_mapper_en (#1038) * Add model 2024-03-15-icd10_meddra_pt_mapper_en * Add model 2024-03-15-meddra_pt_icd10_mapper_en * Update 2024-03-15-icd10_meddra_pt_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md * Update 2024-03-15-meddra_pt_icd10_mapper_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Updated md files * Update 2024-03-14-icd10_meddra_llt_mapper_en.md * Update 2024-03-14-meddra_llt_icd10_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1047) * 2024-03-18-meddra_llt_pt_mapper_en (#1045) * 2024-03-19-drug_matcher_en (#1048) * Update 2024-03-18-meddra_llt_pt_mapper_en.md * Update 2024-03-18-meddra_pt_llt_mapper_en.md * 2024-03-19-explain_clinical_doc_public_health_en (#1049) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed Python code block view --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-19-explain_clinical_doc_public_health_en (#1050) * Add model 2024-03-19-explain_clinical_doc_public_health_en * Update 2024-03-19-explain_clinical_doc_public_health_en.md Fixed python code block view --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-20-medication_resolver_pipeline_en (#1051) * 2024-03-20-medication_resolver_pipeline_en (#1052) * 2024-03-20-explain_clinical_doc_ade_en (#1053) * 2024-03-22-snomed_term_resolver_pipeline_en (#1057) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed Python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1059) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md * Update 2024-03-22-snomed_term_resolver_pipeline_en.md Fixed scala import * Add model 2024-03-22-medication_ner_pipeline_en * Update 2024-03-22-medication_ner_pipeline_en.md * Delete docs/_posts/akrztrk/2024-03-22-medication_ner_pipeline_en.md pipeline name should be ner_medication_pipeline. --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-22-snomed_term_resolver_pipeline_en (#1060) * Add model 2024-03-22-snomed_term_resolver_pipeline_en * Update 2024-03-22-snomed_term_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1062) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1064) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-22-ner_medication_pipeline_en (#1063) * Add model 2024-03-22-ner_medication_pipeline_en * Update 2024-03-22-ner_medication_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en (#1073) * Add model 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Add model 2024-03-24-sbiobertresolve_meddra_preferred_term_en * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-03-24-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-03-24-sbiobertresolve_meddra_preferred_term_en.md * 2024-03-25-explain_clinical_doc_risk_factors_en (#1078) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1079) * 2024-03-25-explain_clinical_doc_risk_factors_en (#1077) * 2024-03-26-clinical_deidentification_en (#1082) * Add model 2024-03-26-clinical_deidentification_en * Update 2024-03-26-clinical_deidentification_en.md * Update 2024-03-26-clinical_deidentification_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-03-26-meddra_llt_resolver_pipeline_en (#1085) * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1083) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-26-meddra_pt_resolver_pipeline_en (#1084) * Add model 2024-03-26-meddra_pt_resolver_pipeline_en * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Add model 2024-03-26-meddra_llt_resolver_pipeline_en * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md * Update 2024-03-26-meddra_llt_resolver_pipeline_en.md * Update 2024-03-26-meddra_pt_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1089) * 2024-03-27-clinical_deidentification_multi_mode_output_en (#1088) * 2024-03-26-clinical_deidentification_multi_mode_output_en (#1086) * 2024-03-27-ner_opioid_en (#1087) * Add model 2024-03-27-ner_opioid_en * Update 2024-03-27-ner_opioid_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-03-27-clinical_deidentification_en (#1090) * 2024-03-27-clinical_deidentification_en (#1091) * 2024-03-28-meddra_hlt_pt_mapper_en (#1097) * Add model 2024-03-28-meddra_hlt_pt_mapper_en * Add model 2024-03-28-meddra_pt_hlt_mapper_en * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Add model 2024-03-28-ner_profiling_deidentification_en * Bump sparknlp version * Shorten included models and fix typo --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> * Update 2024-03-28-meddra_hlt_pt_mapper_en.md * Update 2024-03-28-meddra_pt_hlt_mapper_en.md * 2024-03-28-ner_profiling_deidentification_en (#1099) * 2024-03-28-ner_profiling_deidentification_en (#1100) * 2024-04-08-ner_sdoh_core_en (#1112) * Add model 2024-04-08-ner_sdoh_core_en * Update 2024-04-08-ner_sdoh_core_en.md * Update 2024-04-08-ner_sdoh_core_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-04-12-sbiobertresolve_icd9_en (#1124) * Add model 2024-04-12-sbiobertresolve_icd9_en * Update 2024-04-12-sbiobertresolve_icd9_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-04-12-sbiobertresolve_icd9_en.md * 2024-04-15-assertion_fewshotclassifier_en (#1127) * Add model 2024-04-15-assertion_fewshotclassifier_en * fixed example pipeline --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> * Update 2024-04-15-assertion_fewshotclassifier_en.md * Update 2024-04-15-assertion_fewshotclassifier_en.md * Add model 2024-04-17-sbiobertresolve_umls_findings_en (#1134) Co-authored-by: Ahmetemintek <[email protected]> * Update 2024-04-17-sbiobertresolve_umls_findings_en.md * 2024-04-18-biolordresolve_rxnorm_augmented_en (#1135) * Update 2024-04-18-biolordresolve_rxnorm_augmented_en.md * 2024-04-24-sbiobertresolve_umls_major_concepts_en (#1148) * Add model 2024-04-24-sbiobertresolve_umls_major_concepts_en * Update 2024-04-24-sbiobertresolve_umls_major_concepts_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-04-24-ner_medication_generic_pipeline_en (#1147) * Add model 2024-04-24-ner_medication_generic_pipeline_en * Update 2024-04-24-ner_medication_generic_pipeline_en.md * Update 2024-04-24-ner_medication_generic_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-04-25-ner_medication_generic_pipeline_en (#1149) * 2024-04-25-ner_medication_generic_pipeline_en (#1150) * 2024-04-27-explain_clinical_doc_generic_en (#1155) * 2024-04-28-explain_clinical_doc_generic_en (#1157) * 2024-04-28-explain_clinical_doc_generic_en (#1156) * 2024-04-30-explain_clinical_doc_sdoh_en (#1160) * 2024-05-01-sbiobertresolve_umls_general_concepts_en (#1165) * 2024-05-01-explain_clinical_doc_sdoh_en (#1162) * 2024-05-01-explain_clinical_doc_sdoh_en (#1164) * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_disease_syndrome_en (#1166) * 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en (#1168) * Add model 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md Fixed python code block view * Update 2024-05-02-sbiobertresolve_snomed_veterinary_wip_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-01-sbiobertresolve_umls_general_concepts_en.md * 2024-05-02-sbiobertresolve_umls_drug_substance_en (#1169) * Add model 2024-05-02-sbiobertresolve_umls_drug_substance_en * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-02-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-02-sbiobertresolve_umls_clinical_drugs_en (#1170) * Add model 2024-05-02-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md corrected python code block view * Update 2024-05-02-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-05-05-sbiobertresolve_umls_general_concepts_en (#1173) * Add model 2024-05-05-sbiobertresolve_umls_general_concepts_en * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Add model 2024-05-05-sbiobertresolve_umls_disease_syndrome_en * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Add model 2024-05-05-sbiobertresolve_umls_drug_substance_en * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * Update 2024-05-05-sbiobertresolve_umls_drug_substance_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-03-explain_clinical_doc_mental_health_en (#1172) * Add model 2024-05-03-explain_clinical_doc_mental_health_en * Update 2024-05-03-explain_clinical_doc_mental_health_en.md * Add model 2024-05-03-biolordresolve_umls_general_concepts_en * Update 2024-05-03-biolordresolve_umls_general_concepts_en.md * Delete docs/_posts/akrztrk/2024-05-03-biolordresolve_umls_general_concepts_en.md * Add model 2024-05-06-biolordresolve_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Add model 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en (#1175) * Add model 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en * Update 2024-05-06-sbiobertresolve_snomed_veterinary_wip_en.md Corrected python code block view * Add model 2024-05-06-sbiobertresolve_umls_clinical_drugs_en * Update 2024-05-06-sbiobertresolve_umls_clinical_drugs_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * deleted biolord_icd10cm_augmented_bıllable_hcc * deleted model * deleted models * deleted model * 2024-05-06-biolordresolve_umls_general_concepts_en (#1176) * Add model 2024-05-06-biolordresolve_umls_general_concepts_en * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-06-explain_clinical_doc_mental_health_en (#1179) * 2024-05-06-explain_clinical_doc_mental_health_en (#1180) * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_umls_general_concepts_en.md * Update 2024-05-06-biolordresolve_rxnorm_augmented_en.md * Update 2024-05-06-biolordresolve_icd10cm_augmented_billable_hcc_en.md * 2024-05-06-explain_clinical_doc_granular_en (#1181) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1183) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_granular_en (#1182) * Add model 2024-05-06-explain_clinical_doc_granular_en * Update 2024-05-06-explain_clinical_doc_granular_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> * 2024-05-06-explain_clinical_doc_oncology_en (#1184) * Add model 2024-05-06-biolordresolve_avg_rxnorm_augmented_en * Update 2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Add model 2024-05-06-explain_clinical_doc_oncology_en * Update 2024-05-06-explain_clinical_doc_oncology_en.md * Delete docs/_posts/gokhanturer/2024-05-06-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-06-explain_clinical_doc_oncology_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * Update 2024-05-05-sbiobertresolve_umls_disease_syndrome_en.md * 2024-05-07-biolordresolve_avg_rxnorm_augmented_en (#1185) * 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en (#1187) * Update 2024-05-05-sbiobertresolve_umls_general_concepts_en.md * 2024-05-07-explain_clinical_doc_granular_en (#1188) * deleted md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_avg_rxnorm_augmented_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * Update 2024-05-07-biolordresolve_snomed_findings_aux_concepts_en.md * 2024-05-08-biolordresolve_cpt_procedures_measurements_augmented_en (#1192) * 2024-05-14-snomed_meddra_llt_mapper_en (#1201) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1218) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1219) * 2024-05-18-ner_deid_generic_context_augmented_pipeline_en (#1220) * deleted md * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1223) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1224) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en (#1225) * Add model 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_subentity_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_context_augmented_pipeline_en.md * Add model 2024-05-20-ner_deid_generic_context_augmented_pipeline_en * Update 2024-05-20-ner_deid_generic_context_augmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233) * Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en * Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1239) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md --------- Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-22-explain_clinical_doc_public_health_en (#1240) * Add model 2024-05-22-explain_clinical_doc_public_health_en * Update 2024-05-22-explain_clinical_doc_public_health_en.md Fixed python code block review --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241) * Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en * Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en * Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md * Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2024-05-29-clinical_deidentification_en (#1248) * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * 2024-05-30-clinical_deidentification_en (#1251) * 2024-05-30-clinical_deidentification_en (#1250) * Update 2024-05-30-clinical_deidentification_en.md * Update 2024-05-29-clinical_deidentification_en.md * Update 2024-05-30-clinical_deidentification_en.md * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255) * 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256) * 2024-06-07-classifierml_ade_en (#1258) * Add model 2024-06-07-classifierml_ade_en * Update 2024-06-07-classifierml_ade_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-07-ner_vop_v2_en (#1262) * Add model 2024-06-07-ner_profiling_vop_en (#1261) * 2024-06-03-ner_profiling_vop_en (#1257) * 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266) * Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md fixed python code block review * Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-06-10-assertion_dl_radiology_en (#1265) * 2024-06-10-ner_oncology_wip_en (#1264) * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268) Co-authored-by: kolia1985 <[email protected]> * Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269) Co-authored-by: kolia1985 <[email protected]> * 2024-06-12-sbiobertresolve_umls_findings_en (#1270) * 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275) * 2024-06-20-rxnorm_mapper_en (#1280) * 2024-06-19-explain_clinical_doc_medication_en (#1279) * Add model 2024-06-19-explain_clinical_doc_medication_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-21-rxnorm_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-21-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-21-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-19-country_matcher_en (#1277) * Add model 2024-06-19-country_matcher_en * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Add model 2024-06-19-phone_matcher_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Add model 2024-06-19-zip_matcher_en * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-email_matcher_en * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-country_matcher_en.md * Update 2024-06-19-email_matcher_en.md * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-19-zip_matcher_en.md * Add model 2024-06-19-state_matcher_en * Update 2024-06-19-state_matcher_en.md * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Update 2024-06-19-phone_matcher_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-17-ner_profiling_sdoh_en (#1274) * Add model 2024-06-17-ner_profiling_sdoh_en * Add model 2024-06-18-ner_profiling_oncology_en * Add model 2024-06-19-explain_clinical_doc_medication_en * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Update 2024-06-19-explain_clinical_doc_medication_en.md * Add model 2024-06-24-rxnorm_resolver_pipeline_en * Update 2024-06-24-rxnorm_resolver_pipeline_en.md * Add model 2024-06-24-medication_resolver_transform_pipeline_en * Add model 2024-06-24-medication_resolver_pipeline_en * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1288) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1287) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-06-25-explain_clinical_doc_radiology_en (#1286) * Add model 2024-06-25-explain_clinical_doc_radiology_en * Update 2024-06-25-explain_clinical_doc_radiology_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * Update 2024-06-24-medication_resolver_transform_pipeline_en.md * 2024-06-17-cancer_diagnosis_matcher_en (#1272) * 2024-06-28-explain_clinical_doc_granular_en (#1292) * 2024-06-28-explain_clinical_doc_granular_en (#1295) * 2024-06-28-explain_clinical_doc_granular_en (#1294) * Add model 2024-06-28-explain_clinical_doc_granular_en * Update 2024-06-28-explain_clinical_doc_granular_en.md * Add model 2024-07-01-ner_alcohol_smoking_en * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md * Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md * Update 2024-07-01-ner_alcohol_smoking_en.md * Add model 2024-07-02-biolordresolve_rxnorm_augmented_en * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Akar <[email protected]> * Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md * 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en * Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md * 2024-07-03-ner_menopause_core_en (#1304) * 2024-07-02-city_matcher_en (#1296) * 2024-07-03-re_oncology_biomarker_result_en (#1302) * 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301) * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md * Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en * Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md * Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md * Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md * Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en * Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md * Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en * Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md * Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en * Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-06-26-contextual_assertion_someone_else_en (#1298) * Add model 2024-06-26-contextual_assertion_someone_else_en * Add model 2024-07-03-contextual_assertion_absent_en * Add model 2024-07-04-contextual_assertion_past_en * updated model table. * updated model table-2 * updated example text --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328) * Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en * Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-07-22-ner_profiling_clinical_en (#1335) * 2024-07-22-ner_profiling_clinical_en (#1337) * 2024-07-22-ner_profiling_clinical_en (#1336) * Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343) * 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341) * 2024-08-02-bert_sequence_classifier_metastasis_en (#1356) * Add model 2024-08-02-bert_sequence_classifier_metastasis_en * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md * Update 2024-08-02-bert_sequence_classifier_metastasis_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-09-classifierdl_metastasis_en (#1371) * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * Update 2024-08-09-classifierdl_metastasis_en.md * Update 2024-08-09-generic_logreg_classifier_metastasis_en.md * Update 2024-08-09-generic_svm_classifier_metastasis_en.md * Update 2024-08-09-generic_classifier_metastasis_en.md * 2024-08-12-large_fewshot_classifier_ade_en (#1372) * Add model 2024-08-12-large_fewshot_classifier_ade_en * Update 2024-08-12-large_fewshot_classifier_ade_en.md Fixed Benchmarking Section * Update 2024-08-12-large_fewshot_classifier_ade_en.md Updated the view * Update 2024-08-12-large_fewshot_classifier_ade_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: Cabir C. <[email protected]> * 2024-08-13-generic_classifier_oncology_en (#1374) * 2024-08-16-ner_cancer_types_wip_en (#1390) * Update 2024-08-16-ner_cancer_types_wip_en.md * Update 2024-08-16-ner_cancer_types_wip_en.md * 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384) * 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397) * 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396) * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en * Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en * Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md typo fixed * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md * Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> Co-authored-by: Akar <[email protected]> * 2024-08-15-url_matcher_en (#1387) * Add model 2024-08-15-url_matcher_en * Update 2024-08-15-url_matcher_en.md * Add model 2024-08-15-email_matcher_en * Add model 2024-08-19-ip_matcher_en --------- Co-authored-by: yigitgull <[email protected]> Co-authored-by: Yigit <[email protected]> * 2024-08-20-ner_stigmatization_wip_en (#1398) * 2024-08-21-url_matcher_en (#1400) * Add model 2024-08-21-url_matcher_en * Add model 2024-08-21-ip_matcher_en * Add model 2024-08-21-email_matcher_en --------- Co-authored-by: yigitgull <[email protected]> * Revert "2024-08-15-url_matcher_en (#1387)" (#1401) This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f. * 2024-08-15-large_fewshot_classifier_age_group_en (#1388) * Add model 2024-08-15-large_fewshot_classifier_age_group_en * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed python code block view * Update 2024-08-15-large_fewshot_classifier_age_group_en.md Fixed the code snippet --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404) * 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410) * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2024-08-22-rxnorm_resolver_pipeline_en (#1411) * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409) * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en * Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md * Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en * Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md * Add model 2024-08-22-icd10cm_resolver_pipeline_en * Update 2024-08-22-icd10cm_resolver_pipeline_en.md * Add model 2024-08-22-medication_resolver_transform_pipeline_en * Add model 2024-08-22-rxnorm_resolver_pipeline_en * Add model 2024-08-22-medication_resolver_pipeline_en * Update 2024-08-22-medication_resolver_pipeline_en.md * Update 2024-08-22-medication_resolver_transform_pipeline_en.md * Update 2024-08-22-rxnorm_resolver_pipeline_en.md * Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en * Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md --------- Co-authored-by: bugeki <[email protected]> Co-authored-by: bugra <[email protected]> * 2024-08-27-ner_stigmatization_wip_en (#1419) * Add model 2024-08-27-ner_stigmatization_wip_en * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md * Update 2024-08-27-ner_stigmatization_wip_en.md --------- Co-authored-by: akrztrk <[email protected]> Co-authored-by: Akar <[email protected]> * Add model 2024-08-27-dicom_died_pipeline_en (#1424) Co-authored-by: kolia1985 <[email protected]> * 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437) * Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en * Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md * Add model 2024-09-05-ner_ade_clinical_v2_en * Update 2024-09-05-ner_ade_clinical_v2_en.md --------- Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Vildan <[email protected]> * 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429) * Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md * Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md * Update 2024-09-03-meddra_llt_pt_mapper_en.md * Update 2024-09-03-meddra_pt_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_llt_mapper_en.md * Update 2024-09-04-icd10_meddra_pt_mapper_en.md * Update 2024-09-04-meddra_llt_icd10_mapper_en.md * Update 2024-09-04-meddra_pt_icd10_mapper_en.md * Update 2024-09-05-meddra_hlt_pt_mapper_en.md * Update 2024-09-05-meddra_llt_snomed_mapper_en.md * Update 2024-09-05-meddra_pt_hlt_mapper_en.md * Update 2024-09-05-snomed_meddra_llt_mapper_en.md * 2024-09-06-meddra_pt_resolver_pipeline_en (#1439) * Update 2024-09-06-meddra_pt_resolver_pipeline_en.md * Update 2024-09-06-meddra_llt_resolver_pipeline_en.md * 2024-09-06-ner_deid_generic_docwise_en (#1440) * 2024-09-09-country_matcher_en (#1443) * Add model 2024-09-09-country_matcher_en * Update 2024-09-09-country_matcher_en.md Fixed python code block view * Add model 2024-09-09-zip_parser_en * Update 2024-09-09-zip_parser_en.md Fixed python code block view * Add model 2024-09-09-state_matcher_en * Update 2024-09-09-state_matcher_en.md Fixed python code block view --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2024-09-09-explain_clinical_doc_vop_small_en (#1446) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1444) * 2024-09-09-explain_clinical_doc_cancer_type_en (#1447) --------- Co-authored-by: jsl-models <[email protected]> Co-authored-by: akrztrk <[email protected]> Co-authored-by: Ahmet Mesut BİROL <[email protected]> Co-authored-by: Akar <[email protected]> Co-authored-by: ahmet-mesut <[email protected]> Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Cabir40 <[email protected]> Co-authored-by: RakshitKhajuria <[email protected]> Co-authored-by: Meryem1425 <[email protected]> Co-authored-by: Gökhan <[email protected]> Co-authored-by: bugra <[email protected]> Co-authored-by: Vildan <[email protected]> Co-authored-by: bugeki <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Rakshit Khajuria <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]> Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: gursev.pirge <[email protected]> Co-authored-by: kolia1985 <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: yigitgull <[email protected]> Co-authored-by: Mehmet Butgul <[email protected]>

Add model 2024-03-07-icd10cm_rxnorm_resolver_pipeline_en

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jsl-models added the new model label Mar 7, 2024

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Fixed python code block view

gokhanturer requested a review from muhammetsnts March 7, 2024 22:47

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gokhanturer and others added 2 commits March 8, 2024 23:21

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2024-03-07-icd10cm_rxnorm_resolver_pipeline_en #1013

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jsl-models commented Mar 7, 2024

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