Sync 1.14 branch with develop #3887
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* Fix for issue HDFGroup#3025: Save the MPI info in the file struct so H5Fget_access_plist() can retrieve it from there.
When opening a file with the core VFD and a file image, if the file already exists, the file check would leak the POSIX file handle. Fixes GitHub issue HDFGroup#635
* Cancel running GitHub workflows on push to same PR * Remove github.sha from workflow concurrency groups
Avoids overly verbose output from all processes emitting progress, etc. info.
…Group#3786) The parallel compression test code tests for the case where all MPI ranks have no selection in a dataset when writing to it. Add an early exit to the code to avoid attempting to use a NULL pointer due to there being no work to do.
* H5FD_CURR_SPLITTER_VFD_CONFIG_VERSION * H5FD_SPLITTER_PATH_MAX * H5FD_SPLITTER_MAGIC * H5FD_splitter_vfd_config_t * H5Pset_fapl_splitter() * H5Pget_fapl_splitter()
* Add Doxygen for all H5FD_<VFD> initializers * Add Doxygen for all H5FD_<VFD>_VALUE values * Mark H5FD_<vfd>_init() calls private in Doxygen
* Disable testing as tests are failing the same as in CMake
* Set NVHPC maximum optimization level to -O1 for now Compiling HDF5 with NVHPC 23.5 - 23.9 results in test failures in 4 different test files that need to be resolved. Since those tests pass with an optimization level of -O1 (and -O0) and it is currently unclear whether the test failures are due to issues in HDF5 or issues in the 'nvc' compiler, set the maximum optimization level for NVHPC to -O1 until the test failures are resolved. * Disable nvhpc Java testing in CMake and amend known issues * Re-enable testing of Autotools nvhpc
* fix seg fault on frontier/cray * fix seg fault on frontier/cray * fix seg fault on frontier/cray * removed the use of h5pclose_c * removed the use of h5pclose_c
…ddress_f (HDFGroup#3801) * Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f * Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests
* Create test and add to testphdf5
* provide an alternative to mapfile for older bash
The H5T floating-point datatype initialization code can raise exceptions when handling signaling NaNs. This change disables FE_INVALID exceptions during initialization. Also removes the -ieee=full change for NAG Fortran as that shouldn't be necessary anymore. Fixes HDFGroup#3831
jhendersonHDF
added
Component - Java
Component - Wrappers
jhendersonHDF
requested review from
byrnHDF,
derobins,
brtnfld,
epourmal,
lrknox,
fortnern,
qkoziol,
vchoi-hdfgroup,
bmribler,
glennsong09 and
mattjala
as code owners
|
Please let me know if there are any changes that should not be in this PR. Due to their size, I have left out the commits for 28d2b67 "HDF5 API test updates" and fc88fcd "Develop merge examples" / ac650fa "Update examples with 1.6 api and static libs". These will be merged separately and individually after this PR is merged. |
byrnHDF
reviewed
Dec 7, 2023
| @@ -151,12 +163,18 @@ | |||
| COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5copy${tgt_file_ext}> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam} | |||
| ) | |||
| set_tests_properties (H5COPY-${testname}-prefill PROPERTIES DEPENDS H5COPY-${testname}-clear-objects) | |||
| if ("" MATCHES "${HDF5_DISABLE_TESTS_REGEX}") | |||
There was a problem hiding this comment.
Need to fix this in develop.
S.B.
set_tests_properties (H5COPY-${testname}-prefill PROPERTIES DEPENDS H5COPY-${testname}-clear-objects)
if ("H5COPY-${testname}-prefill" MATCHES "${HDF5_DISABLE_TESTS_REGEX}")
set_tests_properties (H5COPY-${testname}-prefill PROPERTIES DISABLED true)
endif ()
byrnHDF
approved these changes
Dec 7, 2023
lrknox
reviewed
Dec 7, 2023
Co-authored-by: Larry Knox <[email protected]>
lrknox
approved these changes
Dec 7, 2023
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Synchronize 1.14 branch with changes in develop after commit ea1714b