Wrapper scripts for peak callers and differential ChIP-seq (DCS) tools, capable of handling different chromosomes than mm10/chr19.

Peak callers: run_pc_*

Peak dependent DCS tools: run_pd_*

Peak independent DCS tools: run_pi_*

If you are using these scrips or parts of them in your research, please cite:

Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y