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Consider adapting long formats for output files

Status: Open.

#159 In BIMSBbioinfo/pigx_sars-cov-2;

· alexg9010 opened on Feb 24, 2023

Step away from modifying column names

Status: Open.

#158 In BIMSBbioinfo/pigx_sars-cov-2;

· alexg9010 opened on Feb 24, 2023

Better deconvolution error reporting

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#157 In BIMSBbioinfo/pigx_sars-cov-2;

· jonasfreimuth opened on Feb 23, 2023

No version referenced in the reports

prio:MedIssues that needs to be fixed in a monthIssues that needs to be fixed in a month

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#151 In BIMSBbioinfo/pigx_sars-cov-2;

· jonasfreimuth opened on Oct 25, 2022

Rule <code>create_overviewQC_table</code> takes needlessly long

prio:MedIssues that needs to be fixed in a monthIssues that needs to be fixed in a month

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#134 In BIMSBbioinfo/pigx_sars-cov-2;

· jonasfreimuth opened on Aug 13, 2022

include databases in release?

prio:MedIssues that needs to be fixed in a monthIssues that needs to be fixed in a month

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#102 In BIMSBbioinfo/pigx_sars-cov-2;

· alexg9010 opened on Mar 4, 2022

ivar_primer_trim rule: calculate 80% of length for trimming

prio:HighMost urgent issues get this tagMost urgent issues get this tag

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#99 In BIMSBbioinfo/pigx_sars-cov-2;

· rcuadrat opened on Feb 8, 2022

Outputs from only *.vcf file

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#95 In BIMSBbioinfo/pigx_sars-cov-2;

· sinclairify opened on Dec 29, 2021

mutation_sheet: Write script to write a mutation sheet automatically from covidCG lists

good first issueGood for newcomersGood for newcomers

prio:Lowissues needs to be fixed in long termissues needs to be fixed in long term

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#94 In BIMSBbioinfo/pigx_sars-cov-2;

· vicfabienne opened on Sep 2, 2021

Adding num of Sars-Cov-2 hits to taxonomy report

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#92 In BIMSBbioinfo/pigx_sars-cov-2;

· mirifax opened on Aug 18, 2021

reports: get descriptive parameters from settings-file

prio:Lowissues needs to be fixed in long termissues needs to be fixed in long term

questionFurther information is requestedFurther information is requested

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#83 In BIMSBbioinfo/pigx_sars-cov-2;

· vicfabienne opened on Jun 23, 2021

needed: Stack plot giving overview over all samples despite location

prio:MedIssues that needs to be fixed in a monthIssues that needs to be fixed in a month

type:enhancementany enhancement that doesn't fit into aesthetics, bug or documentationany enhancement that doesn't fit into aesthetics, bug or documentation

Status: Open.

#82 In BIMSBbioinfo/pigx_sars-cov-2;

· vicfabienne opened on Jun 22, 2021