Add GitHub Actions CI for unit tests #55
Workflow file for this run
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| name: ANTsPyNet Unit Tests | |
| on: | |
| push: | |
| pull_request: | |
| env: | |
| USE_SOURCE_BUILD: false # Set to 'false' to use PyPI version of ANTsPy | |
| jobs: | |
| test: | |
| name: Test on Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.11] | |
| steps: | |
| - name: Checkout ANTsPyNet | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install build tools | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y cmake build-essential git | |
| - name: Install ANTsPy (source or PyPI) | |
| run: | | |
| if [ "$USE_SOURCE_BUILD" = "true" ]; then | |
| echo "🔧 Installing ANTsPy from GitHub source..." | |
| git clone https://github.com/ANTsX/ANTsPy.git | |
| pip install scikit-build-core pybind11 nanobind # 🔑 install build backend dependencies | |
| pip install ./ANTsPy --no-build-isolation --no-deps | |
| else | |
| echo "📦 Installing ANTsPy from PyPI..." | |
| pip install antspyx | |
| fi | |
| - name: Cache ANTsXNet model/data downloads | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.keras/ANTsXNet | |
| key: antsxnet-${{ runner.os }}-${{ hashFiles('**/download_all_data.py') }} | |
| restore-keys: | | |
| antsxnet-${{ runner.os }}- | |
| - name: Install ANTsPyNet and dependencies | |
| run: | | |
| pip install -e . | |
| sed -i '/antspyx==/d' requirements.txt | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Pre-download ANTsXNet models and data | |
| run: | | |
| python download_all_data.py --strict | |
| - name: Run tests (individually via pytest) | |
| run: | | |
| pip install pytest pytest-xdist pytest-forked psutil | |
| for f in tests/test_*.py; do | |
| echo "🔍 Running $f" | |
| python -c "import psutil; print('Memory before:', psutil.virtual_memory().used // (1024*1024), 'MB')" | |
| pytest -v -s --forked "$f" || exit 1 | |
| python -c "import psutil; print('Memory after :', psutil.virtual_memory().used // (1024*1024), 'MB')" | |
| done |