fix name, title, menu for AWS

zzeppozz · zzeppozz · commit 51bb59ac979b · 2025-09-17T17:09:23.000-05:00
diff --git a/sphinx/aws/add_new_instance_to_specify_cloud.md b/sphinx/aws/add_new_instance_to_specify_cloud.md
@@ -1,4 +1,4 @@
-# Add new Specify instance to Specify Cloud
+# Add new instance to Specify Cloud
 
 ## Example for <dbname>
 
diff --git a/sphinx/aws/asset_server_setup.md b/sphinx/aws/asset_server_setup.md
@@ -1,4 +1,4 @@
-# AWS Specify Asset Server Setup
+# Asset Server Setup
 
 ## EC2 Non-Dockerized Build
 
diff --git a/sphinx/aws/authentication.rst b/sphinx/aws/authentication.rst
@@ -1,4 +1,4 @@
-AWS Authentication
+Authentication
 ###########################
 
 
diff --git a/sphinx/aws/automation_todo.rst b/sphinx/aws/automation_todo.rst
@@ -1,4 +1,4 @@
-AWS Automation
+Automation TODO
 #####################
 
 TODO:
diff --git a/sphinx/aws/aws_cloud_setup.md b/sphinx/aws/aws_cloud_setup.md
@@ -1,4 +1,4 @@
-# Specify Cloud Setup
+# AWS Cloud Setup
 
 ## Setup Aurora MySQL Database
 TODO
diff --git a/sphinx/aws/aws_infrastructure_notes.md b/sphinx/aws/aws_infrastructure_notes.md
diff --git a/sphinx/aws/connect_to_remote_cloud_database.md b/sphinx/aws/connect_to_remote_cloud_database.md
@@ -1,6 +1,8 @@
-# Setup remote database connection to local mysql workbench
+# Connect to remote cloud database
 
-Help clients setup remote database connection to local mysql workbench with an ssh tunnel. There are slightly different parameters for Mac and Windows machines. This is because the parameters have changed slightly since moving from digital ocean to aws.
+Help clients setup remote database connection to local mysql workbench with an ssh 
+tunnel. There are slightly different parameters for Mac and Windows machines. This is 
+because the parameters have changed slightly since moving from digital ocean to aws.
 
 The port forwarding command that needs to be used is
 `ssh -L 3308:<db_host_ip>:3306 <linux_username>@na-db-1.specifycloud.org -i <path_to_ssh_key>`
diff --git a/sphinx/aws/data_size_check_commands.md b/sphinx/aws/data_size_check_commands.md
@@ -1,4 +1,4 @@
-# AWS Data Size Check Commands
+# Data Size Check Commands
 
 commands to get the database sizes:
 ```sql
diff --git a/sphinx/aws/deploy_specify7_to_EC2.md b/sphinx/aws/deploy_specify7_to_EC2.md
@@ -1,4 +1,4 @@
-# Deploy Specify7 to an EC2 instance
+# Deploy Specify7 to EC2
 
 These are the detailed instructions to get Specify7 up and running on an EC2 instance.  
 This is a temporary solution for deployment, with an ECS solution coming in the future.  
diff --git a/sphinx/aws/infrastructure_notes.md b/sphinx/aws/infrastructure_notes.md
@@ -0,0 +1,3 @@
+# Infrastructure Notes
+
+TODO
diff --git a/sphinx/aws/rds_backup_setup.md b/sphinx/aws/rds_backup_setup.md
@@ -1,4 +1,4 @@
-**AWS RDS Backup Setup**
+**RDS Backup Setup**
 
 These are instructions to setup the RDS backup script for each region, along with Cloud Watch logging, and SNS (Simple Notification System) notifications via email of errors in the backup process.
 
diff --git a/sphinx/aws/s3_asset_server.md b/sphinx/aws/s3_asset_server.md
@@ -1,4 +1,4 @@
-# AWS S3 Asset Server
+# S3 Asset Server
 
 ### Here are the S3 Buckets for each of the Asset Regions:
 - us: s3://sp-assets-us/
diff --git a/sphinx/aws/web_portal_with_docker.md b/sphinx/aws/web_portal_with_docker.md
@@ -1,4 +1,4 @@
-# Web Portal using Docker
+# Web Portal with Docker
 
 We are managing our Web Portal instances using a Docker image on EC2.
 
diff --git a/sphinx/history/digital_ocean_to_aws_migration.md b/sphinx/history/digital_ocean_to_aws_migration.md
diff --git a/sphinx/index.rst b/sphinx/index.rst
@@ -19,16 +19,19 @@ Welcome to Specify Developer documentation!
    :maxdepth: 1
    :caption: Amazon Web Services:
 
-   aws/aws_automation
-   aws/aws_infrastructure_notes
-   aws/aws_specify_asset_server_setup
-   aws/aws_specify_cloud_setup
-   aws/client_migration_notes
-   aws/ec2_rds_specify7_setup
    aws/add_new_instance_to_specify_cloud
+   aws/asset_server_setup
+   aws/authentication
+   aws/automation_todo
+   aws/aws_cloud_setup
+   aws/connect_to_remote_cloud_database
+   aws/data_size_check_commands
+   aws/deploy_specify7_to_EC2
+   aws/infrastructure_notes
+   aws/rds_backup_setup
+   aws/s3_asset_server
    aws/specify_cloud_graviton_setup
-   aws/remote_db_connection
-   aws/web-portal-docker
+   aws/web_portal_with_docker
 
 .. toctree::
    :maxdepth: 1
@@ -122,6 +125,11 @@ Welcome to Specify Developer documentation!
    misc/vs_code_django_unit_test_debugging_notes
    misc/branch_from_tag
 
+.. toctree::
+   :maxdepth: 1
+   :caption: History:
+
+   history/digital_ocean_to_aws_migration
 
 
 Indices and tables
diff --git a/sphinx/scc_doc/security/secure_coding_practices.md b/sphinx/scc_doc/security/secure_coding_practices.md
@@ -0,0 +1,16 @@
+# Secure Coding Practices
+
+### Dependency scanning and secret detection: 
+
+We use GitGuardian to automatically detect secrets and credentials in the codebase 
+before they reach production.
+
+### Access control enforcement: 
+
+Specify implements role-based access control (RBAC) to protect sensitive operations and 
+data.
+
+### Regular reviews and manual code audits: 
+
+Security-sensitive parts of the system are reviewed by senior developers, although 
+we do not yet have automated static analysis or a formal secure code review policy. 

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# Add new Specify instance to Specify Cloud`
	`1`	`+# Add new instance to Specify Cloud`
`2`	`2`
`3`	`3`	`## Example for <dbname>`
`4`	`4`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# AWS Specify Asset Server Setup`
	`1`	`+# Asset Server Setup`
`2`	`2`
`3`	`3`	`## EC2 Non-Dockerized Build`
`4`	`4`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-AWS Authentication`
	`1`	`+Authentication`
`2`	`2`	`###########################`
`3`	`3`
`4`	`4`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-AWS Automation`
	`1`	`+Automation TODO`
`2`	`2`	`#####################`
`3`	`3`
`4`	`4`	`TODO:`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# Specify Cloud Setup`
	`1`	`+# AWS Cloud Setup`
`2`	`2`
`3`	`3`	`## Setup Aurora MySQL Database`
`4`	`4`	`TODO`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# AWS Data Size Check Commands`
	`1`	`+# Data Size Check Commands`
`2`	`2`
`3`	`3`	`commands to get the database sizes:`
`4`	`4`	```sql
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# Deploy Specify7 to an EC2 instance`
	`1`	`+# Deploy Specify7 to EC2`
`2`	`2`
`3`	`3`	`These are the detailed instructions to get Specify7 up and running on an EC2 instance.`
`4`	`4`	`This is a temporary solution for deployment, with an ECS solution coming in the future.`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,3 @@`
	`1`	`+# Infrastructure Notes`
	`2`	`+`
	`3`	`+TODO`