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Update usage text in MMseqsBase.cpp
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src/MMseqsBase.cpp

Lines changed: 4 additions & 2 deletions
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@@ -124,11 +124,13 @@ std::vector<Command> baseCommands = {
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"mmseqs createdb file1.fa file2.fa.gz file3.fa sequenceDB\n\n"
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"# Create a seqDB from stdin\n"
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"cat seq.fasta | mmseqs createdb stdin sequenceDB\n\n"
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"# Create a seqDB from another seqDB named inputDB\n"
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"mmseqs createdb inputDB sequenceDB\n\n"
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"# Create a seqDB by indexing existing FASTA/Q (for single line fasta entries only)\n"
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"mmseqs createdb seq.fasta sequenceDB --createdb-mode 1\n",
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"Martin Steinegger <[email protected]>",
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"<i:fastaFile1[.gz|.bz2]> ... <i:fastaFileN[.gz|.bz2]>|<i:stdin> <o:sequenceDB>",
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CITATION_MMSEQS2, {{"fast[a|q]File[.gz|bz2]|stdin", DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA | DbType::VARIADIC, &DbValidator::flatfileStdinAndGeneric },
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"<i:fastaFile1[.gz|.bz2]> ... <i:fastaFileN[.gz|.bz2]>|<i:stdin>|<i:inputDB> <o:sequenceDB>",
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CITATION_MMSEQS2, {{"fast[a|q]File[.gz|bz2]|stdin|inputDB", DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA | DbType::VARIADIC, &DbValidator::flatfileStdinAndGeneric },
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{"sequenceDB", DbType::ACCESS_MODE_OUTPUT, DbType::NEED_DATA, &DbValidator::flatfile }}},
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{"appenddbtoindex", appenddbtoindex, &par.appenddbtoindex, COMMAND_HIDDEN,
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NULL,

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