[automation] Auto-update linters version, help and documentation (#6236)

Author: nvuillam

.automation/generated/linter-helps.json

@@ -64,10 +64,10 @@
     "npm-package-json-lint": "9.0.0",
     "perlcritic": "1.156",
     "php": "7.4.26",
-    "php-cs-fixer": "3.87.2",
+    "php-cs-fixer": "3.88.2",
     "phpcs": "4.0.0",
     "phplint": "9.6.2",
-    "phpstan": "2.1.28",
+    "phpstan": "2.1.29",
     "pmd": "7.17.0",
     "powershell": "7.5.3",
     "powershell_formatter": "7.5.3",
@@ -101,7 +101,7 @@
     "shellcheck": "0.11.0",
     "shfmt": "3.12.0",
     "snakefmt": "0.11.2",
-    "snakemake": "9.11.4",
+    "snakemake": "9.11.6",
     "spectral": "6.15.0",
     "sql-lint": "1.0.0",
     "sqlfluff": "3.4.2",

.automation/generated/linter-versions.json

@@ -42,6 +42,9 @@ Note: Can be used with `oxsecurity/megalinter@beta` in your GitHub Action mega-l
   - [clj-kondo](https://github.com/borkdude/clj-kondo) from 2025.09.19 to **2025.09.22** on 2025-09-23
   - [hadolint](https://github.com/hadolint/hadolint) from 2.13.1 to **2.14.0** on 2025-09-24
   - [kics](https://www.kics.io) from 2.1.13 to **2.1.14** on 2025-09-24
+  - [php-cs-fixer](https://cs.symfony.com/) from 3.87.2 to **3.88.2** on 2025-09-27
+  - [phpstan](https://phpstan.org/) from 2.1.28 to **2.1.29** on 2025-09-27
+  - [snakemake](https://snakemake.github.io/) from 9.11.4 to **9.11.6** on 2025-09-27
 <!-- linter-versions-end -->
 
 ## [v9.0.1] - 2025-09-21

CHANGELOG.md

@@ -57,9 +57,9 @@ This linter is available in the following flavors
 
 |                                                                         <!-- -->                                                                         | Flavor                                                             | Description                                              | Embedded linters |                                                                                                                                                                                                   Info |
 |:--------------------------------------------------------------------------------------------------------------------------------------------------------:|:-------------------------------------------------------------------|:---------------------------------------------------------|:----------------:|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
-| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)               | Default MegaLinter Flavor                                |       126        |                             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
+| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)               | Default MegaLinter Flavor                                |       127        |                             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
 |        <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/c_cpp.ico" alt="" height="32px" class="megalinter-icon"></a>        | [c_cpp](https://megalinter.io/beta/flavors/c_cpp/)                 | Optimized for pure C/C++ projects                        |        55        |                 ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-c_cpp/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-c_cpp) |
-|       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/cupcake.ico" alt="" height="32px" class="megalinter-icon"></a>       | [cupcake](https://megalinter.io/beta/flavors/cupcake/)             | MegaLinter for the most commonly used languages          |        86        |             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-cupcake/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-cupcake) |
+|       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/cupcake.ico" alt="" height="32px" class="megalinter-icon"></a>       | [cupcake](https://megalinter.io/beta/flavors/cupcake/)             | MegaLinter for the most commonly used languages          |        87        |             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-cupcake/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-cupcake) |
 |    <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/documentation.ico" alt="" height="32px" class="megalinter-icon"></a>    | [documentation](https://megalinter.io/beta/flavors/documentation/) | MegaLinter for documentation projects                    |        48        | ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-documentation/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-documentation) |
 |       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnet.ico" alt="" height="32px" class="megalinter-icon"></a>        | [dotnet](https://megalinter.io/beta/flavors/dotnet/)               | Optimized for C, C++, C# or VB based projects            |        63        |               ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnet/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnet) |
 |      <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnetweb.ico" alt="" height="32px" class="megalinter-icon"></a>      | [dotnetweb](https://megalinter.io/beta/flavors/dotnetweb/)         | Optimized for C, C++, C# or VB based projects with JS/TS |        72        |         ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnetweb/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnetweb) |

README.md

@@ -66,9 +66,9 @@ This linter is available in the following flavors
 
 |                                                                         <!-- -->                                                                         | Flavor                                                             | Description                                              | Embedded linters |                                                                                                                                                                                                   Info |
 |:--------------------------------------------------------------------------------------------------------------------------------------------------------:|:-------------------------------------------------------------------|:---------------------------------------------------------|:----------------:|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
-| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)               | Default MegaLinter Flavor                                |       126        |                             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
+| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)               | Default MegaLinter Flavor                                |       127        |                             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
 |        <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/c_cpp.ico" alt="" height="32px" class="megalinter-icon"></a>        | [c_cpp](https://megalinter.io/beta/flavors/c_cpp/)                 | Optimized for pure C/C++ projects                        |        55        |                 ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-c_cpp/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-c_cpp) |
-|       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/cupcake.ico" alt="" height="32px" class="megalinter-icon"></a>       | [cupcake](https://megalinter.io/beta/flavors/cupcake/)             | MegaLinter for the most commonly used languages          |        86        |             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-cupcake/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-cupcake) |
+|       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/cupcake.ico" alt="" height="32px" class="megalinter-icon"></a>       | [cupcake](https://megalinter.io/beta/flavors/cupcake/)             | MegaLinter for the most commonly used languages          |        87        |             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-cupcake/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-cupcake) |
 |    <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/documentation.ico" alt="" height="32px" class="megalinter-icon"></a>    | [documentation](https://megalinter.io/beta/flavors/documentation/) | MegaLinter for documentation projects                    |        48        | ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-documentation/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-documentation) |
 |       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnet.ico" alt="" height="32px" class="megalinter-icon"></a>        | [dotnet](https://megalinter.io/beta/flavors/dotnet/)               | Optimized for C, C++, C# or VB based projects            |        63        |               ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnet/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnet) |
 |      <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnetweb.ico" alt="" height="32px" class="megalinter-icon"></a>      | [dotnetweb](https://megalinter.io/beta/flavors/dotnetweb/)         | Optimized for C, C++, C# or VB based projects with JS/TS |        72        |         ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnetweb/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnetweb) |

docs/all_linters.md

@@ -74,7 +74,7 @@ This linter is available in the following flavors
 
 |                                                                         <!-- -->                                                                         | Flavor                                                             | Description                                              | Embedded linters |                                                                                                                                                                                                   Info |
 |:--------------------------------------------------------------------------------------------------------------------------------------------------------:|:-------------------------------------------------------------------|:---------------------------------------------------------|:----------------:|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
-| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)               | Default MegaLinter Flavor                                |       126        |                             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
+| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)               | Default MegaLinter Flavor                                |       127        |                             ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
 |        <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/c_cpp.ico" alt="" height="32px" class="megalinter-icon"></a>        | [c_cpp](https://megalinter.io/beta/flavors/c_cpp/)                 | Optimized for pure C/C++ projects                        |        55        |                 ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-c_cpp/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-c_cpp) |
 |    <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/documentation.ico" alt="" height="32px" class="megalinter-icon"></a>    | [documentation](https://megalinter.io/beta/flavors/documentation/) | MegaLinter for documentation projects                    |        48        | ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-documentation/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-documentation) |
 |       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnet.ico" alt="" height="32px" class="megalinter-icon"></a>        | [dotnet](https://megalinter.io/beta/flavors/dotnet/)               | Optimized for C, C++, C# or VB based projects            |        63        |               ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnet/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnet) |

docs/descriptors/action_actionlint.md

@@ -67,7 +67,7 @@ This linter is available in the following flavors
 
 |                                                                         <!-- -->                                                                         | Flavor                                                     | Description                                              | Embedded linters |                                                                                                                                                                                           Info |
 |:--------------------------------------------------------------------------------------------------------------------------------------------------------:|:-----------------------------------------------------------|:---------------------------------------------------------|:----------------:|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
-| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)       | Default MegaLinter Flavor                                |       126        |                     ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
+| <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/images/mega-linter-square.png" alt="" height="32px" class="megalinter-icon"></a> | [all](https://megalinter.io/beta/supported-linters/)       | Default MegaLinter Flavor                                |       127        |                     ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter) |
 |       <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnet.ico" alt="" height="32px" class="megalinter-icon"></a>        | [dotnet](https://megalinter.io/beta/flavors/dotnet/)       | Optimized for C, C++, C# or VB based projects            |        63        |       ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnet/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnet) |
 |      <img src="https://github.com/oxsecurity/megalinter/raw/main/docs/assets/icons/dotnetweb.ico" alt="" height="32px" class="megalinter-icon"></a>      | [dotnetweb](https://megalinter.io/beta/flavors/dotnetweb/) | Optimized for C, C++, C# or VB based projects with JS/TS |        72        | ![Docker Image Size (tag)](https://img.shields.io/docker/image-size/oxsecurity/megalinter-dotnetweb/beta) ![Docker Pulls](https://img.shields.io/docker/pulls/oxsecurity/megalinter-dotnetweb) |