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    78 repositories

    • quiltcore-java

      Public
      Java implementation of the Quilt API
      Java
      •
      Apache License 2.0
      •1•0•4•10•Updated Oct 7, 2025Oct 7, 2025

    • benchling-webhook

      Public
      API Gateway for processing Benchling Events
      TypeScript
      •
      Apache License 2.0
      •0•1•7•3•Updated Oct 6, 2025Oct 6, 2025

    • titanic

      Public
      Everythings runs into Iceberg
      TypeScript
      •
      Apache License 2.0
      •0•0•3•1•Updated Oct 6, 2025Oct 6, 2025

    • quilt

      Public
      Quilt is a data mesh for connecting people with actionable data
      pythonserializationdatadata-engineeringparquetdata-version-controldata-versioning
      TypeScript
      •
      Apache License 2.0
      •92•1.3k•25•31•Updated Oct 6, 2025Oct 6, 2025

    • quilt-mcp-server

      Public
      Python
      •
      Apache License 2.0
      •0•1•9•5•Updated Oct 6, 2025Oct 6, 2025

    • nf-quilt

      Public
      Groovy
      •
      GNU General Public License v3.0
      •1•9•15•10•Updated Sep 30, 2025Sep 30, 2025

    • quiltcore

      Public
      Python
      •
      Apache License 2.0
      •0•1•6•13•Updated Sep 30, 2025Sep 30, 2025

    • quiltplus

      Public
      Resource-oriented Python API for Quilt's decentralized social knowledge platform
      pythonversioningdatasetresource-oriented-architecture
      Python
      •
      MIT License
      •0•1•3•12•Updated Sep 19, 2025Sep 19, 2025

    • knowledge-base

      Public
      Knowledge Base Articles for kb.quilt.bio
      0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • iac

      Public
      Infrastructure as code for Quilt deployments
      HCL
      •0•4•0•3•Updated Aug 28, 2025Aug 28, 2025

    • cellxgene-mcp

      Public
      MCP server to deal with cellxgene dataset
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • quickstart-mcp

      Public
      A repository of servers and clients from the Model Context Protocol tutorials
      TypeScript
      •
      MIT License
      •412•0•0•1•Updated Aug 7, 2025Aug 7, 2025

    • voila

      Public
      Voilà turns Jupyter notebooks into standalone web applications
      Python
      •
      Other
      •524•0•0•16•Updated May 23, 2025May 23, 2025

    • omics-quilt-demo

      Public
      Use CDK to create Quilt packages from AWS HealthOmics
      TypeScript
      •
      Apache License 2.0
      •0•0•2•3•Updated Apr 15, 2025Apr 15, 2025

    • app-examples-python

      Public
      A public catalog of Benchling App examples written in Python.
      MIT License
      •11•0•0•1•Updated Mar 18, 2025Mar 18, 2025

    • sample-mcp-server-s3

      Public
      Python
      •
      MIT No Attribution
      •17•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • local

      Public
      Local Mode for the Quilt Catalog
      Python
      •2•4•1•2•Updated Jan 14, 2025Jan 14, 2025

    • gh-actions

      Public
      GH actions and reusable workflows to avoid duplications
      Shell
      •0•0•1•0•Updated Jan 6, 2025Jan 6, 2025

    • plugins

      Public
      Nextflow plugins index repository
      38•0•0•0•Updated Dec 24, 2024Dec 24, 2024

    • fetchngs

      Public
      Pipeline to fetch metadata and raw FastQ files from public and private databases
      Nextflow
      •
      MIT License
      •88•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •798•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • kivy-sdk-packager

      Public
      Scripts for Kivy SDK generation on Windows, OS X and Linux
      Python
      •
      MIT License
      •35•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • benchling-packager

      Public
      Example of Benchling integration
      Python
      •
      Apache License 2.0
      •0•5•3•10•Updated Sep 26, 2024Sep 26, 2024

    • athena-federation-python-sdk

      Public
      Unofficial Python SDK for Athena Federation
      Python
      •
      Apache License 2.0
      •13•0•0•1•Updated Aug 29, 2024Aug 29, 2024

    • packaging-server

      Public
      Public Docker Container providing a REST API for creating Quilt packages in your own private cloud
      Rust
      •
      Apache License 2.0
      •0•0•2•1•Updated Aug 25, 2024Aug 25, 2024

    • nf-prov

      Public
      Groovy
      •
      Apache License 2.0
      •13•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • quilt-package-metadata-athena

      Public
      A comprehensive tutorial outlining
      metadatasqlathenas3quilt-packagesquilt3quilt-data
      Jupyter Notebook
      •0•5•0•1•Updated Aug 12, 2024Aug 12, 2024

    • unitycatalog

      Public
      Open, Multi-modal Catalog for Data & AI
      Java
      •
      Apache License 2.0
      •515•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • nf-prov-quilt

      Public
      Fork of nf-prov with a Quilt format
      Groovy
      •
      Apache License 2.0
      •13•0•0•1•Updated Jun 20, 2024Jun 20, 2024

    • pydoc-markdown

      Public
      Create Python API documentation in Markdown format.
      Python
      •
      MIT License
      •117•0•0•0•Updated Jun 7, 2024Jun 7, 2024