Release gfatools-0.5 (r234)

Author: lh3

NEWS.md

@@ -1,3 +1,20 @@
+Release 0.5-r234 (21 March 2021)
+--------------------------------
+
+Many changes:
+
+ * Use Tarjan's SCC algorithm to identify bubble. This algorithm is more robust
+   to inversions, but requires reference paths.
+
+ * Generate unitig sequences from assembly graphs.
+
+ * Use BFS to extract subgraphs within a radius. The older code uses DFS which
+   is sometimes counter-intuitive.
+
+(21 March 2021, r234)
+
+
+
 Release 0.4-r165 (23 December 2019)
 -----------------------------------
 

gfa.h

@@ -4,7 +4,7 @@
 #include <stdio.h>
 #include <stdint.h>
 
-#define GFA_VERSION "0.4-r233-dirty"
+#define GFA_VERSION "0.5-r234"
 
 #define GFA_O_OV_EXT   0x1
 #define GFA_O_NO_SEQ   0x2