feat: add launch galaxy button to workflow stepper (#437)

[frano-m]

Closes #437.

[Copilot]

Pull Request Overview

This PR introduces a "Launch Galaxy" feature to the workflow stepper by adding new props, hooks, and UI components to handle galaxy launch functionality. Key changes include updating component and type definitions to include “configuredInput” and “onConfigure”, implementing the useLaunchGalaxy hook to open the Galaxy landing page, and adjusting the Reference Assembly and GTF step components for the new functionality.

Reviewed Changes

Copilot reviewed 28 out of 28 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
types.ts (Main & Stepper)	Added new props (configuredInput, onConfigure) and updated key names (configKey → entryKey, label → entryLabel) to support launch galaxy logic.
main.tsx	Modified to pass additional props to the Stepper component.
Stepper components	Updated types and component props to propagate new launch functionality.
ReferenceAssemblyStep	Updated to trigger onConfigure with new keys during useEffect.
GTFStep and related hooks	Introduced launch galaxy button, updated radio group handling, and refined gene model label mapping.
Hooks (UseLaunchGalaxy, UseUCSCFiles, UseRadioGroup)	Added new custom hooks and utilities to facilitate the new workflow logic.
Button constants	Added specific button styling for the new launch galaxy button.

Comments suppressed due to low confidence (2)

app/components/Entity/components/ConfigureWorkflowInputs/components/Main/components/Stepper/components/Step/GTFStep/gtfStep.tsx:50

• Using '!!geneModelUrls' only checks for undefined and may be truthy even if the array is empty. Consider using 'geneModelUrls && geneModelUrls.length > 0' to ensure that the step is active only when there are gene model URLs available.

<Step active={active && !!geneModelUrls} completed={completed} index={index}>

app/components/Entity/components/ConfigureWorkflowInputs/components/Main/components/Stepper/components/Step/GTFStep/gtfStep.tsx:68

• [nitpick] Consider using a unique value (e.g. the 'value' property) as the key instead of the array index to help React reliably identify list items.

<FormControlLabel key={i}

[frano-m]

Using '!!geneModelUrls' only checks for undefined and may be truthy even if the array is empty. Consider using 'geneModelUrls && geneModelUrls.length > 0' to ensure that the step is active only when there are gene model URLs available.

I'm keeping this check here, we need to render the Step if geneModelUrls.length > 0. The check for !!geneModelUrls is intentional; the fetch is pending and we are still waiting for values. While this is occurring, we do not want to "open" the step up.

[NoopDog]

Nice @frano-m !