fix: include ncbiGene.gtf.gz file if there's no refSeq gtf (#414) (#413)

* fix: include ncbiGene.gtf.gz if there is no ncbiRefSeq gtf

* chore: rerun script

* chore: bump package build

* chore: rebuild catalog

Author: mvdbeek

catalog/build/intermediate/genomes-from-ncbi.tsv

@@ -355,6 +355,8 @@ def _id_to_gene_model_url(asm_id: str, session: requests.Session):
   for url in gtf_urls:
     if "ncbiRefSeq" in url:
       return urllib.parse.urljoin(f"{download_base_url}/", url)
+    elif "ncbiGene" in url:
+      return urllib.parse.urljoin(f"{download_base_url}/", url)
     elif "augustus" in url:
       augustus_url = url
   if augustus_url:

catalog/build/py/package/catalog_build/build.py

@@ -2,7 +2,7 @@
 
 setup(
   name="catalog_build",
-  version="2.0.0",
+  version="2.1.0",
   packages=["catalog_build"],
   install_requires=["pandas", "requests", "PyYAML", "BeautifulSoup4", "lxml"],
 )