Merge branch 'main' into genome-viz-display

Author: dannon

.github/workflows/update-catalog.yml

@@ -0,0 +1,39 @@
+name: Update brc data catalog
+
+on:
+  schedule:
+    # At 10:00 on Sunday
+    - cron: "0 10 * * 0"
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+jobs:
+  update-catalog:
+    if: github.repository == 'galaxyproject/brc-analytics'
+    permissions:
+      contents: write
+      pull-requests: write
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+          architecture: "x64"
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Install python dependencies
+        run: pip install -r ./catalog/build/py/requirements.txt
+      - name: Install npm dependencies
+        run: npm ci
+      - name: Run catalog script
+        run: npm run build-files-from-ncbi
+      - name: Get current date
+        id: date
+        run: echo "date=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
+      - name: Create Pull Request
+        uses: peter-evans/create-pull-request@v7
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          title: "chore: update data catalog ${{ steps.date.outputs.date }}"
+          commit-message: "chore: update data catalog ${{ steps.date.outputs.date }}"