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hunterckxhunterckx
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feat: add columns to catalog (#5)
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‎data-catalog/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts

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@@ -1,6 +1,45 @@
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import { BRCDataCatalogGenome } from "../../../../apis/catalog/brc-analytics-catalog/common/entities";
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import * as C from "../../../../components/index";
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/**
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* Build props for the chromosomes cell.
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* @param genome - Genome entity.
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* @returns Props to be used for the cell.
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*/
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export const buildChromosomes = (
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genome: BRCDataCatalogGenome
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): React.ComponentProps<typeof C.BasicCell> => {
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return {
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value: genome.chromosomes,
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};
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};
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/**
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* Build props for the contigs cell.
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* @param genome - Genome entity.
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* @returns Props to be used for the cell.
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*/
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export const buildContigs = (
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genome: BRCDataCatalogGenome
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): React.ComponentProps<typeof C.BasicCell> => {
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return {
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value: genome.contigs,
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};
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};
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/**
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* Build props for the genome version/assembly ID cell.
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* @param genome - Genome entity.
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* @returns Props to be used for the cell.
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*/
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export const buildGenomeVersionAssemblyId = (
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genome: BRCDataCatalogGenome
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): React.ComponentProps<typeof C.BasicCell> => {
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return {
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value: genome.genomeVersionAssemblyId,
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};
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};
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/**
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* Build props for the species cell.
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* @param genome - Genome entity.
@@ -13,3 +52,42 @@ export const buildSpecies = (
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value: genome.species,
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};
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};
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/**
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* Build props for the strain cell.
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* @param genome - Genome entity.
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* @returns Props to be used for the cell.
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*/
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export const buildStrain = (
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genome: BRCDataCatalogGenome
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): React.ComponentProps<typeof C.BasicCell> => {
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return {
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value: genome.strain,
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};
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};
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/**
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* Build props for the supercontigs cell.
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* @param genome - Genome entity.
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* @returns Props to be used for the cell.
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*/
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export const buildSupercontigs = (
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genome: BRCDataCatalogGenome
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): React.ComponentProps<typeof C.BasicCell> => {
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return {
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value: genome.supercontigs,
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};
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};
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/**
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* Build props for the VEuPathDB project cell.
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* @param genome - Genome entity.
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* @returns Props to be used for the cell.
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*/
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export const buildVEuPathDbProject = (
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genome: BRCDataCatalogGenome
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): React.ComponentProps<typeof C.BasicCell> => {
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return {
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value: genome.vEuPathDbProject,
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};
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};

‎data-catalog/site-config/brc-analytics-catalog/category.ts

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Original file line numberDiff line numberDiff line change
@@ -1,7 +1,19 @@
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export const BRC_DATA_CATALOG_CATEGORY_KEY = {
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CHROMOSOMES: "chromosomes",
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CONTIGS: "contigs",
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GENOME_VERSION_ASSEMBLY_ID: "genomeVersionAssemblyId",
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SPECIES: "species",
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STRAIN: "strain",
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SUPERCONTIGS: "supercontigs",
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VEUPATHDB_PROJECT: "vEuPathDbProject",
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};
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export const BRC_DATA_CATALOG_CATEGORY_LABEL = {
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CHROMOSOMES: "Chromosomes",
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CONTIGS: "Contigs",
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GENOME_VERSION_ASSEMBLY_ID: "Genome Version/Assembly ID",
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SPECIES: "Species",
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STRAIN: "Strain",
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SUPERCONTIGS: "Supercontigs",
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VEUPATHDB_PROJECT: "VEuPathDB Project",
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};

‎data-catalog/site-config/brc-analytics-catalog/local/index/genomeEntityConfig.ts

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Original file line numberDiff line numberDiff line change
@@ -26,6 +26,18 @@ export const genomeEntityConfig: EntityConfig<BRCDataCatalogGenome> = {
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key: BRC_DATA_CATALOG_CATEGORY_KEY.SPECIES,
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label: BRC_DATA_CATALOG_CATEGORY_LABEL.SPECIES,
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},
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{
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key: BRC_DATA_CATALOG_CATEGORY_KEY.STRAIN,
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label: BRC_DATA_CATALOG_CATEGORY_LABEL.STRAIN,
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},
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{
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key: BRC_DATA_CATALOG_CATEGORY_KEY.GENOME_VERSION_ASSEMBLY_ID,
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label: BRC_DATA_CATALOG_CATEGORY_LABEL.GENOME_VERSION_ASSEMBLY_ID,
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},
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{
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key: BRC_DATA_CATALOG_CATEGORY_KEY.VEUPATHDB_PROJECT,
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label: BRC_DATA_CATALOG_CATEGORY_LABEL.VEUPATHDB_PROJECT,
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},
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],
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},
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],
@@ -52,6 +64,60 @@ export const genomeEntityConfig: EntityConfig<BRCDataCatalogGenome> = {
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id: BRC_DATA_CATALOG_CATEGORY_KEY.SPECIES,
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width: { max: "1.5fr", min: "212px" },
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},
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{
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componentConfig: {
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component: C.BasicCell,
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viewBuilder: V.buildStrain,
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} as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
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header: BRC_DATA_CATALOG_CATEGORY_LABEL.STRAIN,
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id: BRC_DATA_CATALOG_CATEGORY_KEY.STRAIN,
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width: { max: "1fr", min: "160px" },
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},
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{
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componentConfig: {
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component: C.BasicCell,
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viewBuilder: V.buildGenomeVersionAssemblyId,
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} as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
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header: BRC_DATA_CATALOG_CATEGORY_LABEL.GENOME_VERSION_ASSEMBLY_ID,
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id: BRC_DATA_CATALOG_CATEGORY_KEY.GENOME_VERSION_ASSEMBLY_ID,
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width: { max: "1fr", min: "160px" },
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},
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{
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componentConfig: {
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component: C.BasicCell,
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viewBuilder: V.buildVEuPathDbProject,
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} as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
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header: BRC_DATA_CATALOG_CATEGORY_LABEL.VEUPATHDB_PROJECT,
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id: BRC_DATA_CATALOG_CATEGORY_KEY.VEUPATHDB_PROJECT,
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width: { max: "1fr", min: "160px" },
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},
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{
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componentConfig: {
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component: C.BasicCell,
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viewBuilder: V.buildContigs,
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} as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
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header: BRC_DATA_CATALOG_CATEGORY_LABEL.CONTIGS,
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id: BRC_DATA_CATALOG_CATEGORY_KEY.CONTIGS,
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width: { max: "0.5fr", min: "112px" },
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},
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{
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componentConfig: {
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component: C.BasicCell,
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viewBuilder: V.buildSupercontigs,
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} as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
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header: BRC_DATA_CATALOG_CATEGORY_LABEL.SUPERCONTIGS,
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id: BRC_DATA_CATALOG_CATEGORY_KEY.SUPERCONTIGS,
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width: { max: "0.5fr", min: "112px" },
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},
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{
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componentConfig: {
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component: C.BasicCell,
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viewBuilder: V.buildChromosomes,
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} as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
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header: BRC_DATA_CATALOG_CATEGORY_LABEL.CHROMOSOMES,
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id: BRC_DATA_CATALOG_CATEGORY_KEY.CHROMOSOMES,
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width: { max: "0.5fr", min: "112px" },
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},
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],
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defaultSort: {
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desc: SORT_DIRECTION.ASCENDING,

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