chore: upgrade findable-ui to 14.0.0 (#161) (#162)

Co-authored-by: Fran McDade <[email protected]>

Author: frano-m

app/components/EntityList/components/Organisms/content/index.tsx

@@ -0,0 +1 @@
+export { default as OrganismsWarning } from "./organismsWarning.mdx";

app/components/EntityList/components/Organisms/content/organismsWarning.mdx

@@ -0,0 +1,9 @@
+<Alert {...props}>
+  If you do not see your organism in this list: it will be there! We are in the
+  process of ingesting sequences and annotations for all 785 taxa from
+  VEuPathDb. The table below is generated by comparing the list maintained by
+  VEuPathDB against official NCBI genome builds. The three buttons adjacent to
+  each taxon direct you to a page listing available analytical workflows as well
+  as direct links to genomic data (NCBI Datasets) and a genome browser (UCSC). A
+  comprehensive search functionality will be developed to allow complex queries.
+</Alert>

app/components/Home/components/Section/components/SectionAnalytics/components/AnalyticsTools/analyticsTools.styles.ts

@@ -54,12 +54,6 @@ export const StyledCardActions = styled.div`
 
   .MuiLink-root {
     ${textBody500};
-    color: #035c94;
-    text-decoration: none;
-
-    &:hover {
-      text-decoration: underline;
-    }
   }
 `;
 

app/components/Layout/components/AppLayout/components/Section/components/SectionHero/sectionHero.styles.ts

@@ -57,13 +57,4 @@ export const Subhead = styled.div`
   ${textBodyLarge400};
   color: ${inkLight};
   margin: 0;
-
-  .MuiLink-root {
-    color: inherit;
-    text-decoration: underline;
-
-    &:hover {
-      text-decoration: none;
-    }
-  }
 `;

app/components/index.ts

@@ -1,4 +1,4 @@
-export { FluidAlert } from "@databiosphere/findable-ui/lib/components/common/Alert/alert.styles";
+export { Alert } from "@databiosphere/findable-ui/lib/components/common/Alert/alert";
 export { Breadcrumbs } from "@databiosphere/findable-ui/lib/components/common/Breadcrumbs/breadcrumbs";
 export { Grid } from "@databiosphere/findable-ui/lib/components/common/Grid/grid";
 export { KeyElType } from "@databiosphere/findable-ui/lib/components/common/KeyValuePairs/components/KeyElType/keyElType";

app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts

@@ -181,20 +181,6 @@ export const buildGenomeVersionAssemblyId = (
   };
 };
 
-/**
- * Build props for the organism list hero.
- * @returns Props to be used for the FluidAlert component.
- */
-export const buildOrganismListHero = (): ComponentProps<
-  typeof C.FluidAlert
-> => {
-  return {
-    children:
-      "If you do not see your organism in this list: it will be there! We are in the process of ingesting sequences and annotations for all 785 taxa from VEuPathDb. The table below is generated by comparing the list maintained by VEuPathDB against official NCBI genome builds. The three buttons adjacent to each taxon direct you to a page listing available analytical workflows as well as direct links to genomic data (NCBI Datasets) and a genome browser (UCSC). A comprehensive search functionality will be developed to allow complex queries.",
-    severity: "warning",
-  };
-};
-
 /**
  * Build props for the species cell.
  * @param genome - Genome entity.

mdx-components.tsx

@@ -1,4 +1,7 @@
-import { AccordionDetails as MAccordionDetails } from "@mui/material";
+import {
+  AlertTitle,
+  AccordionDetails as MAccordionDetails,
+} from "@mui/material";
 import { MDXComponents } from "mdx/types";
 import * as C from "./app/components";
 import { CardActions } from "./app/components/Home/components/Section/components/SectionHero/components/Carousel/components/Cards/cards.styles";
@@ -19,6 +22,8 @@ export function useMDXComponents(components: MDXComponents): MDXComponents {
     Accordion,
     AccordionDetails: MAccordionDetails,
     AccordionSummary,
+    Alert: C.Alert,
+    AlertTitle,
     CardActions,
     Figure,
     Grid: C.Grid,