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Update manifest.
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src/scmultiplex/__FRACTAL_MANIFEST__.json

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"multiplexing",
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"3D"
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],
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"docs_info": "### Purpose\n- Series of cleanups after running Warpfield registration.\n- Since only moving rounds are registered to a reference, the reference itself needs to be registered (Cleanup 1)\n- Then tables, labels (Cleanup 2) and misc folders (Cleanup 3) can be moved from unregistered rounds to the registered one. \n\n### Outputs\n- Cleanup 1: must be run separately from Cleanup 2 & 3. Submit only unregistered reference zarr on Fractal server.\n Image data (all channels) from selected ROIs are copied from this reference, e.g. \"0_fused\" to a new reference\n image e.g. \"0_fused_registered\". Inputs should mirror Apply Warpfield Registration task inputs.\n- Cleanup 2: tables and labels from the e.g. \"0_fused\" unregistered reference round can be copied to the\n subsequent registered moving rounds e.g. \"0_fused_registered\", \"1_fused_registered\", etc.\n Submit all registered rounds to Fractal server.\n- Cleanup 3: misc folders e.g. [\"plots\", \"registration\"] can be copied from the unregistered rounds\n e.g. \"0_fused\", \"1_fused\", etc, to the corresponding registered round e.g.\n \"0_fused_registered\", \"1_fused_registered\", etc. Submit all registered rounds to Fractal server.\n\n### Limitations\n- Assumes 3D image, not tested for 2D",
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"docs_info": "### Purpose\n- Series of cleanups after running Warpfield registration.\n- Since only moving rounds are registered to a reference, the reference itself needs to be registered (Cleanup 1)\n- Then tables, labels (Cleanup 2) and misc folders (Cleanup 3) can be moved from unregistered rounds to the registered one.\n\n### Outputs\n- Cleanup 1: must be run separately from Cleanup 2 & 3. Submit only unregistered reference zarr on Fractal server.\n Image data (all channels) from selected ROIs are copied from this reference, e.g. \"0_fused\" to a new reference\n image e.g. \"0_fused_registered\". Inputs should mirror Apply Warpfield Registration task inputs.\n- Cleanup 2: tables and labels from the e.g. \"0_fused\" unregistered reference round can be copied to the\n subsequent registered moving rounds e.g. \"0_fused_registered\", \"1_fused_registered\", etc.\n Submit all registered rounds to Fractal server.\n- Cleanup 3: misc folders e.g. [\"plots\", \"registration\"] can be copied from the unregistered rounds\n e.g. \"0_fused\", \"1_fused\", etc, to the corresponding registered round e.g.\n \"0_fused_registered\", \"1_fused_registered\", etc. Submit all registered rounds to Fractal server.\n\n### Limitations\n- Assumes 3D image, not tested for 2D\n",
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"executable_non_parallel": "fractal/init_select_all_knowing_reference.py",
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"executable_parallel": "fractal/post_registration_cleanup.py",
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"meta_non_parallel": {

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