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Dorr atlas blog (#399)
* automated target selection docs * Dorr atlas blog * delete automated target selection docs * Update docs/source/blog/dorr-mouse-mri-atlas-added.md Co-authored-by: Adam Tyson <[email protected]> * Update docs/source/blog/dorr-mouse-mri-atlas-added.md Co-authored-by: Adam Tyson <[email protected]> * change image to 2d * annotation and ref image * Update docs/source/blog/dorr-mouse-mri-atlas-added.md --------- Co-authored-by: Adam Tyson <[email protected]>
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---
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blogpost: true
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date: November 6, 2025
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author: Saarah Hussain
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location: London, England
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category: brainglobe
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language: English
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---
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# A new mouse MRI atlas been added to BrainGlobe
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[Dorr et al. (2008)](https://doi.org/10.1016/j.neuroimage.2008.03.037) created a high-resolution, three-dimensional MRI-based atlas of the adult C57Bl/6J mouse brain, providing comprehensive anatomical coverage of the cerebrum, cerebellum, and brainstem.
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The atlas was constructed from within-skull, T2-weighted MR images acquired at 32 μm isotropic resolution from forty 12-week-old mice scanned at 7T. Following normalisation, registration, and averaging of individual scans, 62 distinct brain structures were manually delineated.
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This atlas is now available through BrainGlobe as `dorr_mouse_mri_32um`.
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![Dorr atlas annotations](images/dorr_annotation_and_reference.png)
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**Figure 1. Two-dimensional view of the Dorr mouse MRI brain atlas: annotations (left) and reference (right).**
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## How do I use the new atlas?
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You can use the Dorr mouse MRI atlas like all other BrainGlobe atlases. To visualise the atlas, you could follow the steps below:
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* Install BrainGlobe ([instructions](/documentation/index)).
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* Open Napari and follow the steps in our [download tutorial](/tutorials/manage-atlases-in-GUI.md) for the `dorr_mouse_mri_32um` atlas.
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* Run `napari -w brainrender-napari` and visualise the different parts of the atlas as described in our [visualisation tutorial](/tutorials/visualise-atlas-napari).
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The end result will look something like Figure 2.
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![Dorr atlas visualised in napari](images/dorr_brainrender_visualisation.png)
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**Figure 2: The Dorr mouse MRI atlas visualised with `brainrender-napari`.**
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## Why are we adding new atlases?
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A fundamental aim of the BrainGlobe project is to make various brain atlases easily accessible by users across the globe. If you would like to get involved with a similar project, please [get in touch](/contact).
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