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| - |
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| -## Violin and Distribution Plots |
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| - |
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| -::: omicverse.pl.violin |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -## Dot Plots |
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| - |
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| -::: omicverse.pl.dotplot |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.rank_genes_groups_dotplot |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -## Embedding and Scatter Plots |
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| - |
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| -::: omicverse.pl.embedding |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.embedding_celltype |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.embedding_adjust |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.embedding_atlas |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.embedding_multi |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -## Cell Proportion and Analysis |
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| - |
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| -::: omicverse.pl.cellproportion |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -## Bulk Data Visualization |
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| - |
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| -::: omicverse.pl.volcano |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.venn |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.boxplot |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| - |
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| - |
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| -## Density and Contour |
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| - |
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| -::: omicverse.pl.calculate_gene_density |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.add_density_contour |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -## Spatial Plotting |
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| - |
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| - |
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| -::: omicverse.pl.spatial_segment |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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| - |
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| -::: omicverse.pl.spatial_segment_overlay |
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| - handler: python |
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| - selection: |
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| - options: |
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| - show_root_heading: true |
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| - show_source: true |
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