Merge branch 'release/23.4.3'

* release/23.4.3:
  bump version
  distinct, just in case
  new build
  complement of /current
  put in str
  mypy stuff and expand calibrations to include pioreactor_unit
  update view for new calibrations API
  update view for new calibrations API

Author: CamDavidsonPilon

.pre-commit-config.yaml

@@ -29,7 +29,7 @@ repos:
         # https://flake8.pycqa.org/en/latest/user/error-codes.html
         - "--ignore=E203,E266,E501,W503,E402,E401"
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v0.971'  # Use the sha / tag you want to point at
+    rev: 'v1.1.1'  # Use the sha / tag you want to point at
     hooks:
     -   id: mypy
 

CHANGELOG.md

@@ -1,3 +1,9 @@
+### 23.4.3
+ - Backend work to complete calibrations utilities:
+  - Edits to the `calibrations` table in the database require a full drop and recreation.
+  - New API endpoints on the webserver to store calibrations, get calibrations, set as current, etc.
+  - add robots.txt that disallows crawlers
+
 ### 23.3.20
  - New route `/api/installed_plugins/<filename>` for getting back specific Python files in the plugins folder. Later, this will be generalized to getting entry_point plugins, too.
  - Python files in `plugins/` folder on leader are viewable on the /plugins page in the UI.

app.py

@@ -5,6 +5,7 @@
 import logging
 import socket
 import sqlite3
+import typing as t
 from datetime import datetime
 from datetime import timezone
 from logging import handlers
@@ -52,7 +53,7 @@
 ## UTILS
 
 
-def msg_to_JSON(msg, task, level):
+def msg_to_JSON(msg: str, task: str, level: str) -> str:
     return json.dumps(
         {
             "message": msg.strip(),
@@ -64,19 +65,19 @@ def msg_to_JSON(msg, task, level):
     )
 
 
-def publish_to_log(msg, task, level="DEBUG"):
+def publish_to_log(msg: str, task: str, level="DEBUG") -> None:
     client.publish(LOG_TOPIC, msg_to_JSON(msg, task, level))
 
 
-def publish_to_error_log(msg, task):
+def publish_to_error_log(msg, task: str) -> None:
     logger.error(msg)
     if isinstance(msg, str):
         publish_to_log(msg, task, "ERROR")
     else:
         publish_to_log(json.dumps(msg), task, "ERROR")
 
 
-def _make_dicts(cursor, row):
+def _make_dicts(cursor, row) -> dict:
     return dict((cursor.description[idx][0], value) for idx, value in enumerate(row))
 
 
@@ -89,18 +90,20 @@ def _get_db_connection():
     return db
 
 
-def query_db(query, args=(), one=False):
+def query_db(
+    query: str, args=(), one: bool = False
+) -> t.Optional[list[dict[str, t.Any]] | dict[str, t.Any]]:
     cur = _get_db_connection().execute(query, args)
     rv = cur.fetchall()
     cur.close()
     return (rv[0] if rv else None) if one else rv
 
 
-def insert_into_db(insert_smt, args=()):
+def modify_db(statement: str, args=()) -> None:
     con = _get_db_connection()
     cur = con.cursor()
     try:
-        cur.execute(insert_smt, args)
+        cur.execute(statement, args)
         con.commit()
     except Exception as e:
         con.rollback()  # TODO: test

asset-manifest.json

@@ -1,20 +1,20 @@
 {
   "files": {
     "main.css": "/static/css/main.a57f1396.chunk.css",
-    "main.js": "/static/js/main.7e925e66.chunk.js",
-    "main.js.map": "/static/js/main.7e925e66.chunk.js.map",
+    "main.js": "/static/js/main.fdc0c364.chunk.js",
+    "main.js.map": "/static/js/main.fdc0c364.chunk.js.map",
     "runtime-main.js": "/static/js/runtime-main.f68a15a8.js",
     "runtime-main.js.map": "/static/js/runtime-main.f68a15a8.js.map",
     "static/css/2.5f916d0c.chunk.css": "/static/css/2.5f916d0c.chunk.css",
-    "static/js/2.b41ab541.chunk.js": "/static/js/2.b41ab541.chunk.js",
-    "static/js/2.b41ab541.chunk.js.map": "/static/js/2.b41ab541.chunk.js.map",
+    "static/js/2.57de9325.chunk.js": "/static/js/2.57de9325.chunk.js",
+    "static/js/2.57de9325.chunk.js.map": "/static/js/2.57de9325.chunk.js.map",
     "index.html": "/index.html",
-    "precache-manifest.fedfa718fba758d238dbd8356a33f936.js": "/precache-manifest.fedfa718fba758d238dbd8356a33f936.js",
+    "precache-manifest.648ff42b3699e4c6f2f4defe9e8ecd1d.js": "/precache-manifest.648ff42b3699e4c6f2f4defe9e8ecd1d.js",
     "service-worker.js": "/service-worker.js",
     "static/css/2.5f916d0c.chunk.css.map": "/static/css/2.5f916d0c.chunk.css.map",
     "static/css/main.a57f1396.chunk.css.map": "/static/css/main.a57f1396.chunk.css.map",
-    "static/js/2.b41ab541.chunk.js.LICENSE.txt": "/static/js/2.b41ab541.chunk.js.LICENSE.txt",
-    "static/js/main.7e925e66.chunk.js.LICENSE.txt": "/static/js/main.7e925e66.chunk.js.LICENSE.txt",
+    "static/js/2.57de9325.chunk.js.LICENSE.txt": "/static/js/2.57de9325.chunk.js.LICENSE.txt",
+    "static/js/main.fdc0c364.chunk.js.LICENSE.txt": "/static/js/main.fdc0c364.chunk.js.LICENSE.txt",
     "static/media/300.css": "/static/media/roboto-vietnamese-300-normal.48c684d9.woff2",
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     "static/media/500.css": "/static/media/roboto-vietnamese-500-normal.7cda2cfe.woff2",
@@ -23,8 +23,8 @@
   "entrypoints": [
     "static/js/runtime-main.f68a15a8.js",
     "static/css/2.5f916d0c.chunk.css",
-    "static/js/2.b41ab541.chunk.js",
+    "static/js/2.57de9325.chunk.js",
     "static/css/main.a57f1396.chunk.css",
-    "static/js/main.7e925e66.chunk.js"
+    "static/js/main.fdc0c364.chunk.js"
   ]
 }

index.html

@@ -1 +1 @@
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+<!doctype html><html lang="en"><head><meta charset="utf-8"/><link rel="icon" href="/favicon.ico"/><meta name="viewport" content="width=device-width,initial-scale=1"/><meta name="theme-color" content="#000000"/><meta name="description" content="Pioreactor"/><link rel="apple-touch-icon" href="/logo192.png"/><link rel="manifest" href="/manifest.json"/><link href="/static/css/2.5f916d0c.chunk.css" rel="stylesheet"><link href="/static/css/main.a57f1396.chunk.css" rel="stylesheet"></head><body><div id="root"></div><script>!function(e){function r(r){for(var n,i,l=r[0],f=r[1],a=r[2],c=0,s=[];c<l.length;c++)i=l[c],Object.prototype.hasOwnProperty.call(o,i)&&o[i]&&s.push(o[i][0]),o[i]=0;for(n in f)Object.prototype.hasOwnProperty.call(f,n)&&(e[n]=f[n]);for(p&&p(r);s.length;)s.shift()();return u.push.apply(u,a||[]),t()}function t(){for(var e,r=0;r<u.length;r++){for(var t=u[r],n=!0,l=1;l<t.length;l++){var f=t[l];0!==o[f]&&(n=!1)}n&&(u.splice(r--,1),e=i(i.s=t[0]))}return e}var n={},o={1:0},u=[];function i(r){if(n[r])return n[r].exports;var t=n[r]={i:r,l:!1,exports:{}};return e[r].call(t.exports,t,t.exports,i),t.l=!0,t.exports}i.m=e,i.c=n,i.d=function(e,r,t){i.o(e,r)||Object.defineProperty(e,r,{enumerable:!0,get:t})},i.r=function(e){"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})},i.t=function(e,r){if(1&r&&(e=i(e)),8&r)return e;if(4&r&&"object"==typeof e&&e&&e.__esModule)return e;var t=Object.create(null);if(i.r(t),Object.defineProperty(t,"default",{enumerable:!0,value:e}),2&r&&"string"!=typeof e)for(var n in e)i.d(t,n,function(r){return e[r]}.bind(null,n));return t},i.n=function(e){var r=e&&e.__esModule?function(){return e.default}:function(){return e};return i.d(r,"a",r),r},i.o=function(e,r){return Object.prototype.hasOwnProperty.call(e,r)},i.p="/";var l=this.webpackJsonpui=this.webpackJsonpui||[],f=l.push.bind(l);l.push=r,l=l.slice();for(var a=0;a<l.length;a++)r(l[a]);var p=f;t()}([])</script><script src="/static/js/2.57de9325.chunk.js"></script><script src="/static/js/main.fdc0c364.chunk.js"></script></body></html>

pioreactor_icon.svg

@@ -1,31 +1,31 @@
 self.__precacheManifest = (self.__precacheManifest || []).concat([
   {
-    "revision": "c81e789da9557a47c8d5c56595e583f2",
+    "revision": "985fa32e5ff87b0ad4a40b08f646b50b",
     "url": "/index.html"
   },
   {
-    "revision": "6a8548c39a30589737b2",
+    "revision": "62f4cbbae6691348a795",
     "url": "/static/css/2.5f916d0c.chunk.css"
   },
   {
-    "revision": "dedba7ef8f550c771263",
+    "revision": "328be7c5b26b0abbd9d7",
     "url": "/static/css/main.a57f1396.chunk.css"
   },
   {
-    "revision": "6a8548c39a30589737b2",
-    "url": "/static/js/2.b41ab541.chunk.js"
+    "revision": "62f4cbbae6691348a795",
+    "url": "/static/js/2.57de9325.chunk.js"
   },
   {
     "revision": "2d98c9923b33447912a2bf9f7c6aec66",
-    "url": "/static/js/2.b41ab541.chunk.js.LICENSE.txt"
+    "url": "/static/js/2.57de9325.chunk.js.LICENSE.txt"
   },
   {
-    "revision": "dedba7ef8f550c771263",
-    "url": "/static/js/main.7e925e66.chunk.js"
+    "revision": "328be7c5b26b0abbd9d7",
+    "url": "/static/js/main.fdc0c364.chunk.js"
   },
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     "revision": "4e0e34f265fae8f33b01b27ae29d9d6f",
-    "url": "/static/js/main.7e925e66.chunk.js.LICENSE.txt"
+    "url": "/static/js/main.fdc0c364.chunk.js.LICENSE.txt"
   },
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precache-manifest.fedfa718fba758d238dbd8356a33f936.js renamed to precache-manifest.648ff42b3699e4c6f2f4defe9e8ecd1d.js

@@ -1,3 +1,3 @@
 # https://www.robotstxt.org/robotstxt.html
 User-agent: *
-Disallow:
+Disallow: /

robots.txt

@@ -14,7 +14,7 @@
 importScripts("https://storage.googleapis.com/workbox-cdn/releases/4.3.1/workbox-sw.js");
 
 importScripts(
-  "/precache-manifest.fedfa718fba758d238dbd8356a33f936.js"
+  "/precache-manifest.648ff42b3699e4c6f2f4defe9e8ecd1d.js"
 );
 
 self.addEventListener('message', (event) => {